RNA id: TU5759


Basic Information

Item Value
RNA id TU5759
length 461
lncRNA type intronic
GC content 0.46
exon number 3
gene id G4436
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5713222 ~ 5714024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtgtagaccttacaatgaaatactgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagagcttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5695 lncRNA upstream 55142 5657440 ~ 5658080 (+) True G4395
TU5659 lncRNA upstream 76481 5635334 ~ 5636741 (+) True G4378
TU5652 lncRNA upstream 82969 5629938 ~ 5630253 (+) True G4373
TU5585 lncRNA upstream 106331 5552143 ~ 5606891 (+) True G4320
TU5777 lncRNA downstream 41716 5755740 ~ 5756202 (+) True G4454
TU5782 lncRNA downstream 60271 5774295 ~ 5774817 (+) True G4459
TU5809 lncRNA downstream 97926 5811950 ~ 5812165 (+) True G4484
TU5810 lncRNA downstream 100879 5814903 ~ 5815131 (+) True G4485
TU5929 lncRNA downstream 152333 5866357 ~ 5866573 (+) True G4596
XM_036983882.1 mRNA upstream 756136 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA upstream 756136 4949391 ~ 4957086 (+) True agxta
XM_021616297.2 mRNA upstream 1860213 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 1865263 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 1865528 3847623 ~ 3847694 (+) True trnap-cgg
XR_005052837.1 mRNA downstream 845043 6559067 ~ 6651795 (+) False LOC110527749
XM_036985001.1 mRNA downstream 845044 6559068 ~ 6651795 (+) False LOC110527749
XR_005052830.1 mRNA downstream 845044 6559068 ~ 6651795 (+) False LOC110527749
XR_005052839.1 mRNA downstream 845045 6559069 ~ 6651795 (+) False LOC110527749
XM_021609413.2 mRNA downstream 970075 6684099 ~ 6700304 (+) True b3gnt7
TU4684 other upstream 856157 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 856974 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 1271314 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 1313778 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 1535149 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 803458 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 1096970 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 2011022 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 2171367 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 2322593 8036617 ~ 8037154 (+) True G6807

Expression Profile