RNA id: TU5810


Basic Information

Item Value
RNA id TU5810
length 229
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G4485
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5814903 ~ 5815131 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGTTACCGTCCACACTGTTACTGTACACACGATTACACTCCACACTGTTACTATCCACACTGTTGCCGTCCACAACCTTACTGTACACAATGCTACCATTCCCAATACCGTACACACCGTTAATTGTTCATCACCATTCCCTAGCCGCATGTGGTTATCTAACAAGGTGGTCGTTAAGGAGATTGCTTCCCTCAACTACCTTTGTGTGTGAATAGGAAACCTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5809 lncRNA upstream 2738 5811950 ~ 5812165 (+) True G4484
TU5782 lncRNA upstream 40086 5774295 ~ 5774817 (+) True G4459
TU5777 lncRNA upstream 58701 5755740 ~ 5756202 (+) True G4454
TU5759 lncRNA upstream 100879 5713222 ~ 5714024 (+) True G4436
TU5695 lncRNA upstream 156823 5657440 ~ 5658080 (+) True G4395
TU5929 lncRNA downstream 51226 5866357 ~ 5866573 (+) True G4596
TU5948 lncRNA downstream 73231 5888362 ~ 5888781 (+) True G4612
TU5956 lncRNA downstream 78913 5894044 ~ 5894264 (+) True G4620
TU6184 lncRNA downstream 257166 6072297 ~ 6072507 (+) True G4836
TU6282 lncRNA downstream 367637 6182768 ~ 6187774 (+) False G4928
XM_036984615.1 mRNA upstream 47210 5664172 ~ 5767693 (+) False LOC110526525
XR_005052837.1 mRNA downstream 743936 6559067 ~ 6651795 (+) False LOC110527749
XM_036985001.1 mRNA downstream 743937 6559068 ~ 6651795 (+) False LOC110527749
XR_005052830.1 mRNA downstream 743937 6559068 ~ 6651795 (+) False LOC110527749
XR_005052839.1 mRNA downstream 743938 6559069 ~ 6651795 (+) False LOC110527749
XM_021609413.2 mRNA downstream 868968 6684099 ~ 6700304 (+) True b3gnt7
TU4684 other upstream 957838 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 958655 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 1372995 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 1415459 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 1636830 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 702351 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 995863 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1909915 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 2070260 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 2221486 8036617 ~ 8037154 (+) True G6807

Expression Profile