RNA id: TU6184


Basic Information

Item Value
RNA id TU6184
length 211
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G4836
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6072297 ~ 6072507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacaggtgtGCAAATTAATACCGTCGGAGTCCATTAGCCGTCCCACATCCAGCCTGATCAGCCCTGTGCGCTGTGCCTAATCTGTGGCTATCATAACATTGGCATGGGCACGAGCAATTCTCTTTCCCTGACCATACGGCCTCCGCCAAACCATTCAATTACAATTACATCCACCACATTAGTAGATTAGCATAACAACGCTAACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5956 lncRNA upstream 178033 5894044 ~ 5894264 (+) True G4620
TU5948 lncRNA upstream 183516 5888362 ~ 5888781 (+) True G4612
TU5929 lncRNA upstream 205724 5866357 ~ 5866573 (+) True G4596
TU5810 lncRNA upstream 257166 5814903 ~ 5815131 (+) True G4485
TU5809 lncRNA upstream 260132 5811950 ~ 5812165 (+) True G4484
TU6282 lncRNA downstream 110261 6182768 ~ 6187774 (+) False G4928
TU6283 lncRNA downstream 111303 6183810 ~ 6185167 (+) True G4928
TU6411 lncRNA downstream 228776 6301283 ~ 6301808 (+) True G5049
TU6489 lncRNA downstream 283114 6355621 ~ 6356004 (+) True G5125
TU6510 lncRNA downstream 297393 6369900 ~ 6370385 (+) True G5146
XM_036984615.1 mRNA upstream 304604 5664172 ~ 5767693 (+) False LOC110526525
XR_005052837.1 mRNA downstream 486560 6559067 ~ 6651795 (+) False LOC110527749
XM_036985001.1 mRNA downstream 486561 6559068 ~ 6651795 (+) False LOC110527749
XR_005052830.1 mRNA downstream 486561 6559068 ~ 6651795 (+) False LOC110527749
XR_005052839.1 mRNA downstream 486562 6559069 ~ 6651795 (+) False LOC110527749
XM_021609413.2 mRNA downstream 611592 6684099 ~ 6700304 (+) True b3gnt7
TU4684 other upstream 1215232 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 1216049 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 1630389 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 1672853 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 1894224 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 444975 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 738487 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1652539 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 1812884 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 1964110 8036617 ~ 8037154 (+) True G6807

Expression Profile