RNA id: TU6282


Basic Information

Item Value
RNA id TU6282
length 1954
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G4928
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6182768 ~ 6187774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccagagcccggacttgaacccgatcgaacatctctggagagacttgaaactagctgggcggtgatgctccccatccaacttgacaaagcttgagaggatatgcagagaagaatgggagaaactccccaaatacagtggTGCCAAGCtagtaaagtaacaaaatgtgtaatcgggggtctgaacactttccgaatgcactgtaggtagggttaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagataatagacagtatcaacagtatactgtaggtagggttaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtagggttaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaacAGGATAGACAatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtagggatgaagtagctaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtagggttaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtagtggtaaagtaactaggcaacaagatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagataatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaggatagatgatagacagtatcaacagtatactgtaggtaggagtaaagtaactaggcaacaagatagatgatagacagtatcaacagcatgtgatgagtcaaaacgggtcaatgcagatagttaaataaTTAACCAAATAGCTGCCCAGACTAATTATTTAGGAGCCTTATTGGTTGGAGATAGAATCTGtttaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6184 lncRNA upstream 110261 6072297 ~ 6072507 (+) True G4836
TU5956 lncRNA upstream 288504 5894044 ~ 5894264 (+) True G4620
TU5948 lncRNA upstream 293987 5888362 ~ 5888781 (+) True G4612
TU5929 lncRNA upstream 316195 5866357 ~ 5866573 (+) True G4596
TU5810 lncRNA upstream 367637 5814903 ~ 5815131 (+) True G4485
TU6411 lncRNA downstream 113509 6301283 ~ 6301808 (+) True G5049
TU6489 lncRNA downstream 167847 6355621 ~ 6356004 (+) True G5125
TU6510 lncRNA downstream 182126 6369900 ~ 6370385 (+) True G5146
TU6513 lncRNA downstream 183526 6371300 ~ 6371709 (+) True G5149
TU6533 lncRNA downstream 218111 6405885 ~ 6406131 (+) True G5169
XM_036984615.1 mRNA upstream 415075 5664172 ~ 5767693 (+) False LOC110526525
XR_005052837.1 mRNA downstream 371293 6559067 ~ 6651795 (+) False LOC110527749
XM_036985001.1 mRNA downstream 371294 6559068 ~ 6651795 (+) False LOC110527749
XR_005052830.1 mRNA downstream 371294 6559068 ~ 6651795 (+) False LOC110527749
XR_005052839.1 mRNA downstream 371295 6559069 ~ 6651795 (+) False LOC110527749
XM_021609413.2 mRNA downstream 496325 6684099 ~ 6700304 (+) True b3gnt7
TU4684 other upstream 1325703 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 1326520 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 1740860 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 1783324 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 2004695 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 329708 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 623220 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1537272 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 1697617 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 1848843 8036617 ~ 8037154 (+) True G6807

Expression Profile