RNA id: TU6548


Basic Information

Item Value
RNA id TU6548
length 223
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G5183
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6422324 ~ 6422546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtgcactactttcgaccagggcccattgtcaaatgtagtgcactactttcgaccagggcccattgtcaaatgtagtgcactactttcgaccagggcccatagtcaaatgtagtgcactactttcgaccagggcccatagtcaaatgtagtgcactactttcgtcCAGGGCCCattgtcaaatgtagtgcactactttcgaccagggcccatagtcaaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6545 lncRNA upstream 1074 6420908 ~ 6421250 (+) True G5180
TU6533 lncRNA upstream 16193 6405885 ~ 6406131 (+) True G5169
TU6513 lncRNA upstream 50615 6371300 ~ 6371709 (+) True G5149
TU6510 lncRNA upstream 51939 6369900 ~ 6370385 (+) True G5146
TU6489 lncRNA upstream 66320 6355621 ~ 6356004 (+) True G5125
TU6568 lncRNA downstream 11545 6434091 ~ 6434294 (+) True G5203
TU6569 lncRNA downstream 14405 6436951 ~ 6438837 (+) True G5204
TU6572 lncRNA downstream 20359 6442905 ~ 6443190 (+) True G5207
TU6574 lncRNA downstream 21659 6444205 ~ 6444520 (+) True G5209
TU6577 lncRNA downstream 25935 6448481 ~ 6448733 (+) True G5212
XM_036984615.1 mRNA upstream 654631 5664172 ~ 5767693 (+) False LOC110526525
XR_005052837.1 mRNA downstream 136521 6559067 ~ 6651795 (+) False LOC110527749
XM_036985001.1 mRNA downstream 136522 6559068 ~ 6651795 (+) False LOC110527749
XR_005052830.1 mRNA downstream 136522 6559068 ~ 6651795 (+) False LOC110527749
XR_005052839.1 mRNA downstream 136523 6559069 ~ 6651795 (+) False LOC110527749
XM_021609413.2 mRNA downstream 261553 6684099 ~ 6700304 (+) True b3gnt7
TU4684 other upstream 1565259 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 1566076 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 1980416 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 2022880 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 2244251 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 94936 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 388448 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1302500 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 1462845 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 1614071 8036617 ~ 8037154 (+) True G6807

Expression Profile