RNA id: TU6645


Basic Information

Item Value
RNA id TU6645
length 708
RNA type TUCP
GC content 0.49
exon number 1
gene id G5276
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6517482 ~ 6518189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcagactcagtagcctcggtttttcggatgactgccttgcctggttcaccaattactttgcagacagagttcagtgtgtcaaatcggagggcatgctgtccggtcctctggcagtctctatgggggtgccacagggttcaattctcgggccgactcttttctctgtatatatcaatgatgtttctcatgctgcgggcgattccctgatccacctctacgcagacgacaccattctatatacttccggcccgtccttggacactgtgctatctaacctccaaacgagcttcaatgccatacagcactccttccgtggcctccaactgctcttaaacgctagtaaaaccaaatgcatgcttttcaaccgttcgctgcctgcacctgcacgcctgaccagcatcaccaccctggatggttccgaccttgaatatgtggacatctataagtacctaggtgtctggctagactctaaactctccttccagacccatatcaaacatctccaatcgaaaatcaaatcaagagtcggctttctattccgcaacaaagcctccttcactcacgccgccaaacttaccctagtaaaactgactatcctaccgatcctcgacttcggcgacgtcatctacaaaattgcttccaacactctactcagcaaactggatgcagtttatcacagtgccatccgttttgtcactaaagcacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6642 lncRNA upstream 1739 6515106 ~ 6515743 (+) True G5273
TU6635 lncRNA upstream 7355 6509927 ~ 6510127 (+) True G5266
TU6633 lncRNA upstream 11294 6505988 ~ 6506188 (+) True G5264
TU6621 lncRNA upstream 18761 6498421 ~ 6498721 (+) True G5255
TU6619 lncRNA upstream 21104 6495793 ~ 6496378 (+) True G5253
TU6688 lncRNA downstream 60415 6578604 ~ 6579773 (+) True G5304
TU6711 lncRNA downstream 105615 6623804 ~ 6627346 (+) False G5324
TU6712 lncRNA downstream 105615 6623804 ~ 6627346 (+) False G5324
TU6710 lncRNA downstream 108165 6626354 ~ 6629779 (+) False G5324
TU6713 lncRNA downstream 110527 6628716 ~ 6629779 (+) True G5324
XM_036984367.1 mRNA upstream 749789 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA upstream 749789 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA upstream 749789 5664171 ~ 5767693 (+) False LOC110526525
XM_036984485.1 mRNA upstream 749789 5664172 ~ 5767693 (+) False LOC110526525
XM_036984495.1 mRNA upstream 749789 5664172 ~ 5767693 (+) False LOC110526525
XR_005052837.1 mRNA downstream 40878 6559067 ~ 6651795 (+) False LOC110527749
XM_036985001.1 mRNA downstream 40879 6559068 ~ 6651795 (+) False LOC110527749
XR_005052830.1 mRNA downstream 40879 6559068 ~ 6651795 (+) False LOC110527749
XR_005052839.1 mRNA downstream 40880 6559069 ~ 6651795 (+) False LOC110527749
XM_021609413.2 mRNA downstream 165910 6684099 ~ 6700304 (+) True b3gnt7
TU4684 other upstream 1660417 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 1661234 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 2075574 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 2118038 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 2339409 4175323 ~ 4178073 (+) True G3176
TU6993 other downstream 292805 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1206857 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 1367202 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 1518428 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 1711108 8229297 ~ 8230235 (+) True LOC110501328

Expression Profile