RNA id: TU7963


Basic Information

Item Value
RNA id TU7963
length 200
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G6445
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7739625 ~ 7739824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagagctcaatttttatggaatggtctgcctatccatatgagagacacagactcggtctcaacctttaagtctttattgaagactcatctcttcagtagttcctatgattgagtgtagtctggcccaggagtgtgaaggtgaacggaaaggcactggagcaatgaaccgcccttgctgtctctgcctggctggttcccc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7953 lncRNA upstream 19407 7718908 ~ 7720218 (+) True G6435
TU7938 lncRNA upstream 43094 7696280 ~ 7696531 (+) True G6426
TU7454 lncRNA upstream 186527 7552349 ~ 7553098 (+) True G5986
TU7408 lncRNA upstream 455031 7283664 ~ 7284594 (+) True G5943
TU7361 lncRNA upstream 545208 7192444 ~ 7194417 (+) True G5904
TU7966 lncRNA downstream 97603 7837427 ~ 7839951 (+) False LOC110528753
TU7967 lncRNA downstream 97603 7837427 ~ 7839951 (+) False LOC110528753
TU7968 lncRNA downstream 97603 7837427 ~ 7839951 (+) True LOC110528753
TU8030 lncRNA downstream 105021 7844845 ~ 7845416 (+) True G6501
TU8053 lncRNA downstream 153931 7893755 ~ 7894244 (+) True G6522
XM_036985694.1 mRNA upstream 189231 7414613 ~ 7550394 (+) True LOC110528450
XM_036989283.1 mRNA upstream 408583 7330452 ~ 7331042 (+) True LOC118966183
XM_021610318.2 mRNA upstream 632116 7096299 ~ 7107509 (+) False ankle1
XM_036985747.1 mRNA downstream 1738 7741562 ~ 7839934 (+) False LOC110528753
XM_036985790.1 mRNA downstream 1738 7741562 ~ 7839934 (+) False LOC110528753
XM_036986015.1 mRNA downstream 100856 7840680 ~ 7882886 (+) False LOC110528839
XM_036986095.1 mRNA downstream 100856 7840680 ~ 7882886 (+) False LOC110528839
XM_036985987.1 mRNA downstream 100857 7840681 ~ 7882886 (+) False LOC110528839
TU7952 other upstream 14016 7725046 ~ 7725609 (+) True G6434
TU6993 other upstream 928004 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 1221436 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 2882560 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 2883377 4854521 ~ 4856248 (+) True G3596
TU8049 other downstream 145567 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 296793 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 489473 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 515318 8255142 ~ 8255878 (+) True LOC110505168
TU9946 other downstream 1719124 9458948 ~ 9459953 (+) True LOC118966784

Expression Profile