RNA id: TU8026


Basic Information

Item Value
RNA id TU8026
length 1534
lncRNA type intronic
GC content 0.34
exon number 2
gene id G6497
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7903537 ~ 7905319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcactacatctaacccataacacactatactctatcactacatctaacccataacacactatactctatcattacatctaacccataacacactatactctatcattacatctaacccataacacactatactcctctatcactacatctaacccataacacactatactcctatatcactacatctaacccataacacactatactctatcactacatctaacccataacacactatactctatcactacatctaacccataacacactatactctatcattacatctaacccataacacactatactctatcattacatctaacccataacacactatactcctctatcactacatctaacccataacacactatactctatcactacatctaacccataacacactgtactctatcattacatctaacccataacacactatactctaccattacatctaacccataacacactatactcctctatcattacatctaacccataacacactatactcctctatcactacatctaacccataacacactatactcctctatcactacatctaacccataacacactatactctatcactacatctaacccataataCACTacactctatcattacatctaacccataacacactatactcctctatcactacatctaacccataacacactatactctatcattacatctaacccataacacactatactcctctatcattacatctaacccataacacactatactcctctatcattacatctaacccataacacactatactcctctatcactacatctaacccataacacactatactctatcactacatctaacccataacacactatactctagcactacatctaacccataacacactatactcctctatcactacatctaacccataacacactatactctatcattacatctaacccataacacactatactctatcactacatctaacccataacacactatactctatcactacatctaacccataacacactatactctatcactacatctaacccataacacactatactcctctatcattacatctaacccataacacactatactcctctatcactacatctaacccataacacactatactctatcattacatctaacccataacacactatactcctctatcattacatctaacccataacacactatactcctctatcactacatctaacccataacacactgtactctatcactacatctaacccataacacactatactctagcactacatctaacccataacacactatactcctctatcactacatctaacccataacacactatactctatcattacatctaacccataacacactatactcctctatcactacatctaacccataacacactatactcctctatcattacatctttcccataacacactatactcctctatcattacatctaacccataacacactatactcctctatcactacatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8057 lncRNA upstream 5434 7897795 ~ 7898103 (+) True G6526
TU8053 lncRNA upstream 9293 7893755 ~ 7894244 (+) True G6522
TU8030 lncRNA upstream 58121 7844845 ~ 7845416 (+) True G6501
TU7966 lncRNA upstream 63586 7837427 ~ 7839951 (+) False LOC110528753
TU8394 lncRNA downstream 128165 8033484 ~ 8033732 (+) True G6803
TU8403 lncRNA downstream 135716 8041035 ~ 8041418 (+) True G6812
TU8421 lncRNA downstream 143698 8049017 ~ 8049287 (+) True nmur1a
TU8437 lncRNA downstream 162616 8067935 ~ 8068262 (+) True G6838
TU8443 lncRNA downstream 171051 8076370 ~ 8076598 (+) True G6844
XM_036986015.1 mRNA upstream 20651 7840680 ~ 7882886 (+) False LOC110528839
XM_036986095.1 mRNA upstream 20651 7840680 ~ 7882886 (+) False LOC110528839
XM_036985987.1 mRNA upstream 20651 7840681 ~ 7882886 (+) False LOC110528839
XM_036986058.1 mRNA upstream 20651 7841118 ~ 7882886 (+) True LOC110528839
XM_036985790.1 mRNA upstream 63603 7741562 ~ 7839934 (+) False LOC110528753
XM_021611173.2 mRNA downstream 1947 7907266 ~ 7935217 (+) False LOC110528925
XM_036986235.1 mRNA downstream 8744 7914063 ~ 7935217 (+) True LOC110528925
XR_005053652.1 mRNA downstream 47474 7952793 ~ 7952888 (+) True LOC118966768
XM_036986300.1 mRNA downstream 143676 8048995 ~ 8085970 (+) False nmur1a
XM_021611590.2 mRNA downstream 246754 8152073 ~ 8162387 (+) True LOC110529397
TU8049 other upstream 17630 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 177928 7725046 ~ 7725609 (+) True G6434
TU6993 other upstream 1091916 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 1385348 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 3046472 4856525 ~ 4857065 (+) True G3597
TU8398 other downstream 131298 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 323978 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 349823 8255142 ~ 8255878 (+) True LOC110505168
TU9946 other downstream 1553629 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 2078456 9983775 ~ 9984464 (+) False LOC110510920

Expression Profile