RNA id: TU8566


Basic Information

Item Value
RNA id TU8566
length 217
lncRNA type read_through
GC content 0.36
exon number 3
gene id G6946
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8209462 ~ 8225068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAACCTCTCAACCCCCACCAACATCAGCATGTACTTCACTCTCTACGGCATCCTGGGTGTGGAGGAAAAAGCACAACTGTTGTACACCTACATTTGGCTGGTGAAGGAATGGGAGAATGAATTTTTCAGCTGGGACCCAGTCCAATGCGGCTCTGCCAATATTTCTCTCCCCAGGGAAAGGTTCTGGTCACCAGATGTGGTAATCAATGAATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8505 lncRNA upstream 12443 8117910 ~ 8197019 (+) True LOC100135997
TU8532 lncRNA upstream 61985 8145046 ~ 8147477 (+) True G6912
TU8412 lncRNA upstream 121717 8086029 ~ 8087745 (+) False G6821
TU8417 lncRNA upstream 121717 8087210 ~ 8087745 (+) True G6821
TU8415 lncRNA upstream 121865 8087210 ~ 8087597 (+) False G6821
TU8586 lncRNA downstream 15367 8240435 ~ 8240724 (+) True G6964
TU8589 lncRNA downstream 18215 8243283 ~ 8249184 (+) True G6967
TU8594 lncRNA downstream 27394 8252462 ~ 8252670 (+) True G6969
TU8603 lncRNA downstream 38582 8263650 ~ 8263921 (+) True G6978
TU8608 lncRNA downstream 47868 8272936 ~ 8274241 (+) True G6983
XM_021611929.2 mRNA upstream 9796 8192682 ~ 8199666 (+) True LOC110529566
XM_021611716.2 mRNA upstream 18234 8187929 ~ 8191228 (+) True LOC110529481
XM_036974755.1 mRNA upstream 25431 8182237 ~ 8184031 (+) False LOC100135997
XM_036975274.1 mRNA upstream 25431 8182237 ~ 8184031 (+) False LOC100135997
NM_001124334.1 mRNA upstream 25431 8182348 ~ 8184031 (+) False LOC100135997
XM_036989290.1 mRNA downstream 4121 8229189 ~ 8231566 (+) False LOC110501328
XM_036989291.1 mRNA downstream 30805 8255873 ~ 8271732 (+) False LOC110505168
XM_036987202.1 mRNA downstream 261586 8486654 ~ 8494344 (+) True LOC110529807
XM_036989292.1 mRNA downstream 377657 8602725 ~ 8612667 (+) False LOC110515166
LOC110532690 mRNA downstream 399818 8624886 ~ 8634174 (+) True LOC110532690
TU8398 other upstream 172308 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 323555 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 483853 7725046 ~ 7725609 (+) True G6434
TU6993 other upstream 1397841 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 1691273 6517482 ~ 6518189 (+) True G5276
TU8580 other downstream 4229 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 30074 8255142 ~ 8255878 (+) True LOC110505168
TU9946 other downstream 1233880 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1758707 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1760314 9985382 ~ 9991542 (+) True LOC110510920

Expression Profile