RNA id: TU8603


Basic Information

Item Value
RNA id TU8603
length 272
lncRNA type intronic
GC content 0.34
exon number 1
gene id G6978
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8263650 ~ 8263921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacaatccatgcctcaatgatccttctttaacctgtctcttccccgacatctacactgattgaaatggatttaacaagtgacatcaacaagggataataggtcagtctatgtcaaggaaagagcagatgttcctaCAGCGCAGTGGTACAGCGGTCTATAAGaccctgcatctcagtactacagaccctggttccattccaggctgtatcacagcagtctaagacactgcatctcagtactacagaccctggttccattccaggctgtatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8594 lncRNA upstream 10980 8252462 ~ 8252670 (+) True G6969
TU8589 lncRNA upstream 14466 8243283 ~ 8249184 (+) True G6967
TU8586 lncRNA upstream 22926 8240435 ~ 8240724 (+) True G6964
TU8566 lncRNA upstream 38582 8209462 ~ 8225068 (+) True G6946
TU8505 lncRNA upstream 66631 8117910 ~ 8197019 (+) True LOC100135997
TU8608 lncRNA downstream 9015 8272936 ~ 8274241 (+) True G6983
TU8610 lncRNA downstream 10745 8274666 ~ 8275427 (+) True G6985
TU8626 lncRNA downstream 41844 8305765 ~ 8306401 (+) True G7001
TU8634 lncRNA downstream 107253 8371174 ~ 8373438 (+) True G7009
TU8695 lncRNA downstream 162312 8426233 ~ 8426444 (+) True G7066
XM_036989290.1 mRNA upstream 32084 8229189 ~ 8231566 (+) False LOC110501328
XR_005039281.1 mRNA upstream 38383 8224365 ~ 8225267 (+) True LOC118943893
XM_036989287.1 mRNA upstream 49763 8209333 ~ 8213887 (+) True LOC110497697
XM_021611929.2 mRNA upstream 63984 8192682 ~ 8199666 (+) True LOC110529566
XM_021611716.2 mRNA upstream 72422 8187929 ~ 8191228 (+) True LOC110529481
XM_036987202.1 mRNA downstream 222733 8486654 ~ 8494344 (+) True LOC110529807
XM_036989292.1 mRNA downstream 338804 8602725 ~ 8612667 (+) False LOC110515166
LOC110532690 mRNA downstream 360965 8624886 ~ 8634174 (+) True LOC110532690
XM_036988195.1 mRNA downstream 403248 8667169 ~ 8674156 (+) False LOC110519734
XM_036988230.1 mRNA downstream 403249 8667170 ~ 8693760 (+) True LOC110519734
TU8596 other upstream 7772 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 33415 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 226496 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 377743 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 538041 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 1195027 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1719854 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1721461 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 1877323 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 3212743 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile