RNA id: TU9075


Basic Information

Item Value
RNA id TU9075
length 349
lncRNA type intronic
GC content 0.37
exon number 1
gene id G7387
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8610502 ~ 8610850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCATTTACCAGTCAATggttttaccactacatcactgcctATGATATACCCTTATCCTCCCTGAATAGATTTCAGTACAAACAAATCATGAGCCAACCATCATGCTTAGAAGGTacatagtcaaatcaaatcaactcaaactttatttgtcacatgcgctgaatacaacaagtgtagatcttTCCGTGAAAtactttacttacaagcccttaacaaacagtgcagttcaagaagagttgaaGAGAATATTTACccaataaactaaagtaacaaataataaaaCAGTTGAACttgtccagtggccatttgattaattgttcagcagtctaatgacttgggggtagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9071 lncRNA upstream 3531 8606748 ~ 8606971 (+) True G7383
TU8676 lncRNA upstream 114661 8495735 ~ 8495841 (+) True G7047
TU8725 lncRNA upstream 134934 8475364 ~ 8475568 (+) True G7092
TU8724 lncRNA upstream 135421 8474845 ~ 8475081 (+) True G7091
TU8722 lncRNA upstream 141381 8468705 ~ 8469121 (+) True G7089
TU9077 lncRNA downstream 499 8611349 ~ 8611729 (+) True LOC110515166
TU9084 lncRNA downstream 9720 8620570 ~ 8620924 (+) True G7396
TU9085 lncRNA downstream 10083 8620933 ~ 8676015 (+) True G7397
TU9113 lncRNA downstream 100664 8711514 ~ 8768048 (+) True G7414
TU9119 lncRNA downstream 112033 8722883 ~ 8723224 (+) True G7417
XM_036987202.1 mRNA upstream 116158 8486654 ~ 8494344 (+) True LOC110529807
XM_036989291.1 mRNA upstream 338770 8255873 ~ 8271732 (+) False LOC110505168
XM_036989290.1 mRNA upstream 378936 8229189 ~ 8231566 (+) False LOC110501328
XR_005039281.1 mRNA upstream 385235 8224365 ~ 8225267 (+) True LOC118943893
XM_036989287.1 mRNA upstream 396615 8209333 ~ 8213887 (+) True LOC110497697
LOC110532690 mRNA downstream 14036 8624886 ~ 8634174 (+) True LOC110532690
XM_036988195.1 mRNA downstream 56319 8667169 ~ 8674156 (+) False LOC110519734
XM_036988230.1 mRNA downstream 56320 8667170 ~ 8693760 (+) True LOC110519734
XM_036987965.1 mRNA downstream 110720 8721570 ~ 8747704 (+) False LOC118936489
XM_036988014.1 mRNA downstream 124739 8735589 ~ 8747704 (+) True LOC118936489
TU8596 other upstream 354624 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 380267 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 573348 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 724595 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 884893 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 848098 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1372925 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1374532 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 1530394 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2865814 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile