RNA id: TU9084


Basic Information

Item Value
RNA id TU9084
length 355
lncRNA type intronic
GC content 0.47
exon number 1
gene id G7396
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8620570 ~ 8620924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggacgacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9077 lncRNA upstream 8841 8611349 ~ 8611729 (+) True LOC110515166
TU9075 lncRNA upstream 9720 8610502 ~ 8610850 (+) True G7387
TU9071 lncRNA upstream 13599 8606748 ~ 8606971 (+) True G7383
TU8676 lncRNA upstream 124729 8495735 ~ 8495841 (+) True G7047
TU8725 lncRNA upstream 145002 8475364 ~ 8475568 (+) True G7092
TU9085 lncRNA downstream 9 8620933 ~ 8676015 (+) True G7397
TU9113 lncRNA downstream 90590 8711514 ~ 8768048 (+) True G7414
TU9119 lncRNA downstream 101959 8722883 ~ 8723224 (+) True G7417
TU9139 lncRNA downstream 135547 8756471 ~ 8808166 (+) True G7436
TU9143 lncRNA downstream 147600 8768524 ~ 8797364 (+) True G7440
XM_036989292.1 mRNA upstream 7903 8602725 ~ 8612667 (+) False LOC110515166
XM_036987202.1 mRNA upstream 126226 8486654 ~ 8494344 (+) True LOC110529807
XM_036989291.1 mRNA upstream 348838 8255873 ~ 8271732 (+) False LOC110505168
XM_036989290.1 mRNA upstream 389004 8229189 ~ 8231566 (+) False LOC110501328
XR_005039281.1 mRNA upstream 395303 8224365 ~ 8225267 (+) True LOC118943893
LOC110532690 mRNA downstream 3962 8624886 ~ 8634174 (+) True LOC110532690
XM_036988195.1 mRNA downstream 46245 8667169 ~ 8674156 (+) False LOC110519734
XM_036988230.1 mRNA downstream 46246 8667170 ~ 8693760 (+) True LOC110519734
XM_036987965.1 mRNA downstream 100646 8721570 ~ 8747704 (+) False LOC118936489
XM_036988014.1 mRNA downstream 114665 8735589 ~ 8747704 (+) True LOC118936489
TU8596 other upstream 364692 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 390335 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 583416 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 734663 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 894961 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 838024 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1362851 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1364458 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 1520320 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2855740 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile