RNA id: TU9523


Basic Information

Item Value
RNA id TU9523
length 442
lncRNA type intronic
GC content 0.42
exon number 3
gene id G7780
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9217219 ~ 9218494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGAAGAGAGATATGTCGCACGTGAGGGAAACAACTCCGTGTCTAGGCCTTCTGAAGTTTCTGTCCTCCCAAACCTAGACTCTGGTCCACCAACTAACTTTGCCAGTCAAAAGGATCCAGGGTCAAAGAGAAACATCACAGTCCGTTTAGGTGTGCATGTGGCACTCTTTGGTCCAGGAGAATTTATTGTCCCTGAGTTACTTCTTGCCCTATACAAAGAGCCAGTTCTCTACAGTcttggagagaacagaggggtgcTTTCCCTGCGAATACTGGGAATAAGAAAGAGTGACCTCTGACCACTGTGATTGCATCACATCATGGACTCTTCTGAACCTCTCCACCTGAGGATGCAGACCTCCTTCAGTTCTTTATTCTCTGTTGTCTTCTTGTTTGTTTATAGTCTATCTCTGTAGTGCTGTCAATATTACTCTCAAATTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9514 lncRNA upstream 21492 9195355 ~ 9195727 (+) True G7776
TU9495 lncRNA upstream 63376 9153538 ~ 9153843 (+) True G7757
TU9478 lncRNA upstream 86374 9130604 ~ 9130845 (+) True G7740
TU9312 lncRNA upstream 339692 8874781 ~ 8877527 (+) True G7581
TU9300 lncRNA upstream 352042 8864181 ~ 8865177 (+) True G7573
TU9803 lncRNA downstream 13032 9231526 ~ 9231756 (+) True G8000
TU9812 lncRNA downstream 19510 9238004 ~ 9238233 (+) True G8009
TU9835 lncRNA downstream 84598 9303092 ~ 9303588 (+) True G8030
TU9836 lncRNA downstream 85468 9303962 ~ 9304110 (+) True G8031
TU9838 lncRNA downstream 93921 9312415 ~ 9315424 (+) False G8032
XM_021614466.2 mRNA upstream 34137 9171968 ~ 9183082 (+) False LOC110531220
XM_036989375.1 mRNA upstream 34137 9171968 ~ 9183082 (+) False LOC110531220
XM_036989433.1 mRNA upstream 34137 9171968 ~ 9183082 (+) True LOC110531220
XM_036989170.1 mRNA upstream 301819 8877593 ~ 8915400 (+) False usp13
XM_021614393.2 mRNA downstream 164 9218658 ~ 9221408 (+) True LOC110531147
XM_021614129.2 mRNA downstream 21625 9240119 ~ 9300065 (+) False psmd1
XM_021614202.2 mRNA downstream 21625 9240119 ~ 9300065 (+) False psmd1
XM_021614254.2 mRNA downstream 21625 9240119 ~ 9300065 (+) True psmd1
XM_036990199.1 mRNA downstream 210023 9428517 ~ 9436879 (+) False LOC118966743
TU8596 other upstream 961341 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 986984 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1180065 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1331312 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 1491610 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 240454 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 765281 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 766888 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 922750 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2258170 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile