RNA id: TU9840


Basic Information

Item Value
RNA id TU9840
length 2902
lncRNA type intronic
GC content 0.31
exon number 2
gene id G8032
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9312415 ~ 9315424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACCAACTGTATTGTATTTAAAGTGCAGGATTTATGTACAAAAATACAGCTGTGTTGGACTCAGCATCCCAAAGAAACGAGAGAACAGAAGAAAGGCACAAACTccggggagagagaaagagtacagGACAaagtgatagacagagagagagagaaagacactgaGACAAGCAATGAGAGAATAAGAGTGCAACAAGTAACTGAGCAGACAGCATCGTTCCATTGGATCCCTTCCCTACAACACATTCATACACTTCAGGTTTGTACACTAACAAAATGTAAAACATTGTCTTTGTAGAAAACACTACTGTATCCCCAACTACTACAACTGTCTGTTGTTGACTTCAAGGTAATAACAGGCAAATATCGCTCACATTGGATTTAAATCATGACAGAAAACGGTACATGAACAGCCAGCCGTATTAAAATCAACTATTCTTCTCGTTACAGGTCCAAGAATCTATGGGTCATTGACTGAATCTACACCGAGTATACAAAatcatgctctttccatgacactgaccaggtgaaagctatgatcccttattgacgtgacttgttaaatccatttcaaatcagtgtagatgaaggcgaagagacgggttaaagaaggatttttaagccttgagacatggattgtgtgccattcagagggtgaatgtgcaagacaaaatatttatgtgcctttgaacgggggggggggggggggggggggtggtatgatagtaggtgccaggcaatgctgctgggttgttcacactcaacagtttcccgtgtgtatcaagaatggttcaccaccaaaggtcatccagccaacttgacaactgtgcattggagtcaacatggtccagcatccctgtggaatgctttcgacaccttgcagagtcTATGCCCtgacgaactgaggctgttctgaggggaaaaggggagcaactcaatattaggaaggtggaaGGTGTTCCAAAAGTTTGGAATACTCAATGACCAAACACTTTTGAAGTGGAGGAACTATATCCAGTAGAACTACATTAAGTCCAAAGAACAGCATGCCCTCCCAGTCACCTCCCTGTCAAACTCTACATTTATATTCCACTCACTCAGAGTGAAGTGGGGGATTTCTAAATGGAGCCCTCCCTCCAGTGGCCACACGAGGTAATTGGACCAGTTATTTCCTCACTGTGTCAGACCCACTACAAACTAGTTGTTTCCTCACTGTGTCAGACCCACTACAAACTAGTTGTTTCCTCACTGTGTCAGACCCACTACAAACTAGTTGTTTCCTCACCCTGTCAGACCCAATACAAACTAGCCTTAGACTAGACTTTTCAGGAACAGCACTATTGGGCAATCATTAAAATCGCTATATTTAAACTGATATTCAAATCTCCTCGGTGCATCACCACTGGCTGGTGTCAGAGCAAGACTCCATGGTGCATGAGACCACCATGGACATAATGAAACGCGTCTTGCCTCTGAAATGTCCAACTGGCTCAACATACAATAAGATGGCTGACGAGAGACATGGAGTCTCTGGCCCAATCCCACCCCTAAATCCTATGTTTAACATATTGCGTACACCAATAAAATCCTCTCAGATCTTCACATGTGCTTAGGGCTTGGGGATGGATTTGGGATTGGGCCAGCGTGTTCTCTTTCAGCTGATATCCATCCTCTTCGGCCACAGAGCCTGGATCATGGAACACTGATACTCAGTAAGCACTAGGGAGCATATTGGCTTGTACAGACTTCAGTTTGGATATGTCAGTAACTATGAGGCTGATAAAAGTGCTTTTGGTGCCCATTTAAAAATTACCCATCAGGCCCAGGTACATTGCCAGGTGGCAAAGACTGCGTGATGGGGAAGACGAAAGGATGACATTTAAAAAGGGGAACATTTCATTCATTATTTATCAACAACACTGGAGAGGGCTTCACACTGTCCTATAGTAAACATTTTTGTGAACGTCTCTTTGTTATCCAATAAGTTAAAGTTAATTATGTAACTATTATGCAGTAAAATCCTGTACATGGGTAAATGTGGATACTTTTCTAGACTATTGCCCTTCCTTTTTGGTACACTCTACCACCTTGATATCTCATCTAAACTTAAATTCACACCCTtaccagtggggggggggggggtgttctatGTTCCAGCTAGACCAACAATCAATGAAATCATAATAGTCTTAAAACAGGTGTagaaaatacacacaaaaaaaacacacaaaaacaaggATGCAAGCACAATCGACTTACAGTACTCACCCTTGTTCATAATGTGTTGTCTTTCTGACATTACCGCTTCTGAGAATCTCGCTCAACTTTACTTCCTATTCTGCTTATACTGTATATGATATAGAAATGTATGTATATTTATGTACAATACATCATTTACAATGACATTATATGGTTCCAATCGTTATATAAAATACAAGTAAAATGCATACATAAAATGTGCCAAAATTGATACTTCATCATTGTAACAAACAGTTCAAACAACTGAAGAAGAAAACGTATTTTAAAAAGGGGGAGGTTAAGACTCACTGTGGGAACTATACATGTAACACACTGAGATATTGCATAAGCATACCAGGAATGTGCATAAATATTCCCTCAGGTAAATCACTAATAAATCACACCTGGTGCATGGCAACACACTGCTAGCCACTCAACAGCCTGATGGTCAAAACCGCCATTCAAAAGTCGGGATTACTGCCTGCTTGTAAAGACCGACGTTGCTGTTCGAAAGTAATGACAACCTCTGTCGCACCGTGCTCTTCCGACATCACAACTAATAAAGACGTGGCGGTTTAAAAGTAATGACAACCTCTGTCGCACCGTGCTCTTCCGACATCACAACTAATAAAGACGTGGCGGTTTAAAAGTAATGACAACCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9836 lncRNA upstream 8305 9303962 ~ 9304110 (+) True G8031
TU9835 lncRNA upstream 8827 9303092 ~ 9303588 (+) True G8030
TU9812 lncRNA upstream 74182 9238004 ~ 9238233 (+) True G8009
TU9803 lncRNA upstream 80659 9231526 ~ 9231756 (+) True G8000
TU9523 lncRNA upstream 93921 9217219 ~ 9218494 (+) True G7780
TU9887 lncRNA downstream 51052 9366476 ~ 9367099 (+) True G8075
TU9955 lncRNA downstream 167804 9483228 ~ 9483574 (+) True LOC110510917
TU9964 lncRNA downstream 201431 9516855 ~ 9557160 (+) True G8142
TU9967 lncRNA downstream 205363 9520787 ~ 9561179 (+) True G8143
TU9968 lncRNA downstream 211072 9526496 ~ 9677481 (+) True G8144
XM_021614129.2 mRNA upstream 12350 9240119 ~ 9300065 (+) False psmd1
XM_021614202.2 mRNA upstream 12350 9240119 ~ 9300065 (+) False psmd1
XM_021614254.2 mRNA upstream 12350 9240119 ~ 9300065 (+) True psmd1
XM_021614393.2 mRNA upstream 91007 9218658 ~ 9221408 (+) True LOC110531147
XM_036989433.1 mRNA upstream 129333 9171968 ~ 9183082 (+) True LOC110531220
XM_036990199.1 mRNA downstream 113093 9428517 ~ 9436879 (+) False LOC118966743
XM_036990336.1 mRNA downstream 113733 9429157 ~ 9431792 (+) False LOC118966743
XM_036990127.1 mRNA downstream 113877 9429301 ~ 9436879 (+) False LOC118966743
XM_036990165.1 mRNA downstream 113877 9429301 ~ 9436879 (+) False LOC118966743
XM_036990224.1 mRNA downstream 113877 9429301 ~ 9436879 (+) False LOC118966743
TU8596 other upstream 1056537 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1082180 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1275261 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1426508 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 1586806 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 143524 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 668351 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 669958 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 825820 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2161240 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile