RNA id: TU9964


Basic Information

Item Value
RNA id TU9964
length 348
lncRNA type read_through
GC content 0.43
exon number 2
gene id G8142
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9516855 ~ 9557160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTACCTTCTAAGCATGATGGTTGGCTCATGATTTGTTTGTACTGAAATCTATTCAGGGAGGATAAGGGTATATCATaggcagtgatgtagtggtaaaaccATTGACTGGTAAATGCTGATTGCCGTTCAGGATTAAAGAAGTAACGCTCCCTCTACTTTCAATGCATCTTCCACAAAAGGTGGGTAAATGCttgcacaaaataaaataaaaagtgtgtAAACAGCTTTTAcatgtgttcccccccccccaccactgaTTATAGGAGGCTTCTTCTGACAGTATTCACACCTTTCATAAGAAACCTCCAGAGAAATATTCATATTCACCGTAGCTGTCATTTAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9955 lncRNA upstream 33281 9483228 ~ 9483574 (+) True LOC110510917
TU9887 lncRNA upstream 149756 9366476 ~ 9367099 (+) True G8075
TU9838 lncRNA upstream 201431 9312415 ~ 9315424 (+) False G8032
TU9839 lncRNA upstream 201431 9312415 ~ 9315424 (+) False G8032
TU9840 lncRNA upstream 201431 9312415 ~ 9315424 (+) True G8032
TU9981 lncRNA downstream 16485 9573645 ~ 9574529 (+) True G8157
TU9982 lncRNA downstream 18676 9575836 ~ 9788175 (+) True G8158
TU9990 lncRNA downstream 37688 9594848 ~ 9647813 (+) True LOC118937346
TU9992 lncRNA downstream 44863 9602023 ~ 9602478 (+) True G8167
TU9988 lncRNA downstream 65907 9623067 ~ 9623904 (+) True LOC118937363
XM_036933753.1 mRNA upstream 3380 9505888 ~ 9513475 (+) False LOC118936734
XM_036933839.1 mRNA upstream 3380 9505888 ~ 9513475 (+) False LOC118936734
XM_036933911.1 mRNA upstream 3380 9506954 ~ 9513475 (+) False LOC118936734
XM_036933975.1 mRNA upstream 3380 9507022 ~ 9513475 (+) True LOC118936734
XM_036933356.1 mRNA upstream 20576 9493321 ~ 9496279 (+) True LOC118936706
XM_036935798.1 mRNA downstream 7332 9564492 ~ 9572580 (+) False LOC110522382
XM_036935759.1 mRNA downstream 8233 9565393 ~ 9572580 (+) False LOC110522382
XM_036935836.1 mRNA downstream 8719 9565879 ~ 9572580 (+) False LOC110522382
XM_036935868.1 mRNA downstream 8719 9565879 ~ 9572580 (+) True LOC110522382
XM_036935428.1 mRNA downstream 29303 9586463 ~ 9595241 (+) False LOC118937346
TU9946 other upstream 56902 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1260977 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1286620 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1479701 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1630948 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 426615 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 428222 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 584084 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1919504 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3681453 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile