RNA id: TU9992


Basic Information

Item Value
RNA id TU9992
length 279
lncRNA type intronic
GC content 0.46
exon number 2
gene id G8167
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9602023 ~ 9602478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgggaacaggaacaatggtggccctcttgaagcatgttttcgttgcaggccgtgtcagtggcactgtattgtcctcaaagcgggcaaaaaaagttatttagtctgcctgggagcaggacatcctggtccgtgactgggctggatttcttcctgtagtccgtgattgactgtagaccctgccacatgcctcttgtgtctgagccgttgaattgagattctactttgtctctgtactgacgcttagcttgtttgatagccttgcggagggaatagctgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9981 lncRNA upstream 27494 9573645 ~ 9574529 (+) True G8157
TU9967 lncRNA upstream 40844 9520787 ~ 9561179 (+) True G8143
TU9964 lncRNA upstream 44863 9516855 ~ 9557160 (+) True G8142
TU9955 lncRNA upstream 118449 9483228 ~ 9483574 (+) True LOC110510917
TU9887 lncRNA upstream 234924 9366476 ~ 9367099 (+) True G8075
TU9988 lncRNA downstream 20589 9623067 ~ 9623904 (+) True LOC118937363
TU10009 lncRNA downstream 73740 9676218 ~ 9698543 (+) True LOC118937357
TU10001 lncRNA downstream 86432 9688910 ~ 9690104 (+) True G8176
TU10018 lncRNA downstream 103718 9706196 ~ 9785562 (+) False G8191
TU10019 lncRNA downstream 103718 9706196 ~ 9726596 (+) True G8191
XM_036935428.1 mRNA upstream 6782 9586463 ~ 9595241 (+) False LOC118937346
XM_036935471.1 mRNA upstream 6782 9586463 ~ 9595241 (+) False LOC118937346
XM_036935798.1 mRNA upstream 29443 9564492 ~ 9572580 (+) False LOC110522382
XM_036935759.1 mRNA upstream 29443 9565393 ~ 9572580 (+) False LOC110522382
XM_036935836.1 mRNA upstream 29443 9565879 ~ 9572580 (+) False LOC110522382
XM_036936912.1 mRNA downstream 4152 9606630 ~ 9609304 (+) False LOC118937622
XR_005034856.1 mRNA downstream 4152 9606630 ~ 9609304 (+) True LOC118937622
XM_036935700.1 mRNA downstream 11177 9613655 ~ 9623690 (+) False LOC118937363
XM_036935356.1 mRNA downstream 35265 9637743 ~ 9668473 (+) False LOC118937339
XM_036935247.1 mRNA downstream 36174 9638652 ~ 9668473 (+) False LOC118937339
TU9946 other upstream 142070 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1346145 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1371788 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1564869 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1716116 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 381297 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 382904 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 538766 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1874186 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3636135 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile