RNA id: TU10036


Basic Information

Item Value
RNA id TU10036
length 344
lncRNA type read_through
GC content 0.54
exon number 2
gene id G8200
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9772064 ~ 9933555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtactctgctgtactctgtctgctgtactctactgtagtctgctgtagtctgctgtactctgtctgctgtactttactgtactctgctgtgctctactgtactatacaccaCTGGGTATACAGACTCTTCAGATACTGTTAGCGAACACCAGACTGAGGTCGAGGCGATTACATGGGGAAAAGGTTTATGACTGTAAGGGTGTTTGGTACAAAGGCAACACTACATCGGGCCACATTTCAGCTCTATCCCAGGTCAACCATACAATACTATAGATTTCCACTCTAGTCAACCAgcaagaaggagagacagacagaaggtctGGCTTTGACTATGTCAATGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10019 lncRNA upstream 45468 9706196 ~ 9726596 (+) True G8191
TU10009 lncRNA upstream 73521 9676218 ~ 9698543 (+) True LOC118937357
TU10001 lncRNA upstream 81960 9688910 ~ 9690104 (+) True G8176
TU9968 lncRNA upstream 94583 9526496 ~ 9677481 (+) True G8144
TU9990 lncRNA upstream 124251 9594848 ~ 9647813 (+) True LOC118937346
TU10063 lncRNA downstream 64978 9859404 ~ 9915393 (+) True G8225
TU10069 lncRNA downstream 97991 9892417 ~ 9931446 (+) True G8231
TU10072 lncRNA downstream 113380 9907806 ~ 9925501 (+) True LOC118937372
TU10076 lncRNA downstream 133413 9927839 ~ 9947260 (+) True G8238
TU10105 lncRNA downstream 213584 10008010 ~ 10008505 (+) True G8263
XM_036936517.1 mRNA upstream 4374 9758134 ~ 9767690 (+) True LOC118937415
XM_036936244.1 mRNA upstream 15795 9741905 ~ 9756269 (+) False LOC110510916
XM_036936289.1 mRNA upstream 15795 9742345 ~ 9756269 (+) False LOC110510916
XM_036936326.1 mRNA upstream 15795 9743128 ~ 9756269 (+) True LOC110510916
XM_036936416.1 mRNA upstream 34264 9731004 ~ 9737800 (+) True LOC118937403
XM_036989299.1 mRNA downstream 5247 9799673 ~ 9802451 (+) True LOC118966328
XM_036936178.1 mRNA downstream 8030 9802456 ~ 9806644 (+) True LOC118936500
XM_036989300.1 mRNA downstream 24791 9819217 ~ 9826268 (+) True LOC110515163
XM_036938257.1 mRNA downstream 31583 9826009 ~ 9828460 (+) True LOC110511657
XM_036934788.1 mRNA downstream 43102 9837528 ~ 9845115 (+) False LOC110515172
TU9946 other upstream 312111 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1516186 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1541829 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1734910 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1886157 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 189349 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 190956 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 346818 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1682238 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3444187 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile