RNA id: TU10063


Basic Information

Item Value
RNA id TU10063
length 271
lncRNA type read_through
GC content 0.38
exon number 3
gene id G8225
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9859404 ~ 9915393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAATTGGGAGGTGCCAGAGGGGGGGCTCTGTGGTACCAGAACTCATGAGAAAAAAGATCACCTATTATAATAGAGCATTGAACGCATATCATCACATTTGGGTAGAGCCACTTATAGAAGGTGCACACATGGGGAACATTTTTAGTAGCCTAGGGTCCGGGAAAGTGTTGGCCTTTTTAAAACCGCATTTCGTGCAATTCTACataattttacatgactggagactttggcatTATCTTTTTTTAATCCGCACAAATGATCGAAatggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10036 lncRNA upstream 64978 9772064 ~ 9794426 (+) False G8200
TU9982 lncRNA upstream 71229 9575836 ~ 9788175 (+) True G8158
TU10018 lncRNA upstream 73842 9706196 ~ 9785562 (+) False G8191
TU10019 lncRNA upstream 132808 9706196 ~ 9726596 (+) True G8191
TU10009 lncRNA upstream 160861 9676218 ~ 9698543 (+) True LOC118937357
TU10076 lncRNA downstream 12446 9927839 ~ 9947260 (+) True G8238
TU10105 lncRNA downstream 92617 10008010 ~ 10008505 (+) True G8263
TU10106 lncRNA downstream 93627 10009020 ~ 10009350 (+) True G8264
TU10107 lncRNA downstream 95623 10011016 ~ 10011230 (+) True G8265
TU10108 lncRNA downstream 96457 10011850 ~ 10012067 (+) True G8266
XM_036934788.1 mRNA upstream 14289 9837528 ~ 9845115 (+) False LOC110515172
XM_036934845.1 mRNA upstream 14289 9837528 ~ 9845115 (+) False LOC110515172
XM_036934914.1 mRNA upstream 14289 9837541 ~ 9845115 (+) False LOC110515172
XM_036934969.1 mRNA upstream 14289 9837541 ~ 9845115 (+) True LOC110515172
XM_036938257.1 mRNA upstream 30944 9826009 ~ 9828460 (+) True LOC110511657
XM_036935940.1 mRNA downstream 1762 9917155 ~ 9924757 (+) True LOC118937370
XM_036989302.1 mRNA downstream 21772 9937165 ~ 9945082 (+) True LOC118966382
XM_036935035.1 mRNA downstream 41285 9956678 ~ 9964323 (+) False LOC118937321
XM_036935087.1 mRNA downstream 41285 9956678 ~ 9964323 (+) False LOC118937321
XM_036935135.1 mRNA downstream 42318 9957711 ~ 9964323 (+) False LOC118937321
TU9946 other upstream 399451 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1603526 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1629169 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1822250 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1973497 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 68382 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 69989 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 225851 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1561271 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3323220 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile