RNA id: TU10108


Basic Information

Item Value
RNA id TU10108
length 218
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G8266
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10011850 ~ 10012067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtagcagcagtagtagtagtagcagcagcagtagcattagtagcagcagtagtagtagtagtagcagtagcattagtagtagcagcagtagtagtagtagtagcagcagtagtagtagcagcagtagtagtagtagcagcagcagtagcattagtagcagcagtagtagtagtagtagcagtagcattagtagtagcagcagtagtagtagtagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10107 lncRNA upstream 620 10011016 ~ 10011230 (+) True G8265
TU10106 lncRNA upstream 2500 10009020 ~ 10009350 (+) True G8264
TU10105 lncRNA upstream 3345 10008010 ~ 10008505 (+) True G8263
TU10076 lncRNA upstream 64590 9927839 ~ 9947260 (+) True G8238
TU10069 lncRNA upstream 80404 9892417 ~ 9931446 (+) True G8231
TU10094 lncRNA downstream 38974 10051041 ~ 10053076 (+) True G8253
TU10148 lncRNA downstream 69101 10081168 ~ 10083667 (+) True G8295
TU10165 lncRNA downstream 106943 10119010 ~ 10134267 (+) True G8304
TU10493 lncRNA downstream 125267 10137334 ~ 10137566 (+) True G8600
TU10555 lncRNA downstream 208277 10220344 ~ 10222076 (+) True G8651
XM_036936075.1 mRNA upstream 24155 9980536 ~ 9987695 (+) False LOC110510920
XM_021592072.2 mRNA upstream 29240 9980527 ~ 9982610 (+) False LOC110510920
XM_036935087.1 mRNA upstream 47527 9956678 ~ 9964323 (+) False LOC118937321
XM_036938569.1 mRNA downstream 634 10012701 ~ 10048677 (+) False LOC110533060
XM_036938421.1 mRNA downstream 639 10012706 ~ 10048677 (+) False LOC110533060
XM_036938604.1 mRNA downstream 15000 10027067 ~ 10048677 (+) False LOC110533060
XM_036938466.1 mRNA downstream 15002 10027069 ~ 10048677 (+) False LOC110533060
XM_036938528.1 mRNA downstream 15353 10027420 ~ 10048677 (+) False LOC110533060
TU9934 other upstream 20308 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 27386 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 551897 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1755972 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1781615 8229297 ~ 8230235 (+) True LOC110501328
TU10501 other downstream 129177 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1464597 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3226546 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 3616796 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 3617969 13630036 ~ 13631890 (+) False G12410

Expression Profile