RNA id: TU10493


Basic Information

Item Value
RNA id TU10493
length 233
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G8600
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10137334 ~ 10137566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggcccatgttgactcaattgcttctcacagttgtatcaagttggctggatgtcctttgggtggtggaccattcttgatacacacaggaagctgttgtgtgaaaaaaacagcagcgttgcagttcttgaccaaatgtatttataaagcccttcgtacatcagctgatatctcaaagtgctgtacaggaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10165 lncRNA upstream 3067 10119010 ~ 10134267 (+) True G8304
TU10148 lncRNA upstream 53667 10081168 ~ 10083667 (+) True G8295
TU10094 lncRNA upstream 84258 10051041 ~ 10053076 (+) True G8253
TU10108 lncRNA upstream 125267 10011850 ~ 10012067 (+) True G8266
TU10107 lncRNA upstream 126104 10011016 ~ 10011230 (+) True G8265
TU10555 lncRNA downstream 82778 10220344 ~ 10222076 (+) True G8651
TU10556 lncRNA downstream 84691 10222257 ~ 10224611 (+) True G8652
TU10603 lncRNA downstream 162316 10299882 ~ 10301188 (+) False G8695
TU10604 lncRNA downstream 162316 10299882 ~ 10300236 (+) True G8695
TU10676 lncRNA downstream 279777 10417343 ~ 10420536 (+) True G8764
XM_021587979.2 mRNA upstream 29446 10104207 ~ 10107888 (+) True lim2.2
XM_036939156.1 mRNA upstream 29463 10104169 ~ 10107871 (+) False lim2.2
XM_036939042.1 mRNA upstream 35697 10096943 ~ 10101637 (+) False asb3
XM_021618308.2 mRNA downstream 2664 10140230 ~ 10162948 (+) False gipc3
XM_036940763.1 mRNA downstream 1295536 11433102 ~ 11492490 (+) False LOC110523899
XM_036940849.1 mRNA downstream 1295536 11433102 ~ 11492490 (+) False LOC110523899
XM_036940803.1 mRNA downstream 1295537 11433103 ~ 11492489 (+) False LOC110523899
XM_036940911.1 mRNA downstream 1295537 11433103 ~ 11492489 (+) False LOC110523899
TU9934 other upstream 145792 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 152870 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 677381 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1881456 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1907099 8229297 ~ 8230235 (+) True LOC110501328
TU10501 other downstream 3678 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1339098 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3101047 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 3491297 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 3492470 13630036 ~ 13631890 (+) False G12410

Expression Profile