RNA id: TU10556


Basic Information

Item Value
RNA id TU10556
length 2155
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G8652
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10222257 ~ 10224611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgctaatttaaaaaaatgtgataCAATATCTCTGTtaaaaaaaaacgaaacaaaaaaattacaataaaaAGTCAGCTATGtaaagtaaaataacaatagtcaTCATAACACAACATTCATGTTTCCATAATGTTACAATAACAATAAGGCTTTTTTTGGAAATAACAAAGACTACAAACAGTTCCTTTCATCATTCTGTTAGTGTATATACCAATCCAAAAACCTTCCCAGAATCCATTGTAAAAGCATACTCCTGGGTATACCAAAGCACAGACCTctgagaaaaaaatacaattttgggCTTTGAGGGCTTGTTTTTGTCAGACACGTGTACATAGTGGGTAGAATCGGACCTGCTATTGTTTAGATTTCAAGTTTCGTGATGTGCAAGTCATTTTTATCGTGGACATAACTTTCACATCACAACAGATCTTCCCCAGTCATCCACAGTGGCCTTTGAGAAAAGACAGGAACCTTTCTCTGGGTTATCAACTCAGTTCCTCAAAACTTTGAACCACTGTCCTTCCACTGTTAGTAGAGAGCTAGTCTCTCTCTTTAAGTCAAGCTTGGGACATGAATGTCGTGTGAGACAGTGAGTCCAGAGGAGGCCGAGAGGAgttgatgggggaggggggggggggggggggggggcataacaTGTGGATGCGCTTTCAGTCTCAGCCTCATGGGTGCAAACTGACACCGCCAGACCAGGCACCTCCATTGTCATCCCATACCAGAGTCACACTTACAGCATACAGGAGAATAAGCAGCATGTTTAGTATTGACAGAAAACCCCCAGAAATACACATAATTTTAAGACAAAATTAACAAATGATTACAATGGGTTGTTGATCACTGTACAAGTTTGCAAAGAGAGCTCAGTTGCCGCCATTCACCATGCCAAGTTCTCCTGTGGTGATTCCACTCGGTCAATATGTTGGGCCCTGCACCAGTAAAAACTAGTCCTGAACGAAGAGTGACAGTAAAAAGTCAAGGGACTTCATTGTCATTTATCTGGTCTTGCAAGAGCGGTCTCTTTTCACCCAGTTTCCATGGTGACTGAGGCTAAGAGAGCTATATCAGTGGTTACTGTATAAACATGTTGGGGTTTGTCCTCAAGAAGCTCCACACGTCAAGTGATGGAGAAACTGAAACGGTAATTTGATTGAATCTGCATTATCCACCGCTGGCAGTCACTATATGACACCGTCATCACTTTCCCCCAGAATATTCTGTACTGCAGAAGCTCCTCTTAGCCCAAAGAGTTGAAGGGATATAGGGCTGCCCTTTGTACGAGATGATGGACATGTTGGGAGTTGAGCTTCTAAGGTTGTAACAGAACTGTGGGCAGTAGAAGTTATCTTGCTTAGAGAGAAGGATGAGTGTGGTAGGGGGTCCCGAATGGAGGTCGACTTCTTTTGCCAGTACCTTACCGTTAACTCAGTGTGTTTGTCTCATCAGAGGTGTCTGACATTTTGGGGACAATCATCTGTGTACACAGGCAACCACAGTTTTCCATCAGAAGTGTTTATAAACAACTAGGAACTGTGAACCTCTGTCCTTACATGGTAAAAAAGGCGCTTCCCCATTTAAAGCTACATCCACTCCACCATTTTCTCAGTTTTTACcaatccctttttttttttttacctcagtcACGTTCGCCCAGTTGGTTTTTCCTTCATTcactgttgtattgtttgtaaCGTAGTTAATTTTTAATAGATGTCCACGAAATGTTTACAATGTCCACCTCCACATCTGAACACTTGAGGTAAGGTTAGCAGTCCAACACTTTAATTATTCCCACCCCACAGCTTGAGCCACCACTTTTGGTTCCTTTCTTCAGAGTGAGGGCGTCAATTAGTTCTGCTGATGGAGTCATTTACGGTTTCCTCACCGACATCAAAGTCCATTGGGTCCAATTGGAATTGCACTCTtgttgacttaaaaaaaaaagaataataatctACAATTCGTTTGCTATTCTGTTGGTTGAATTTTGTTTTCtggctgctgttgttgttttcaTTTCTATGGCTCAGGAGACTGTTGAGGGGGACATAGGATTCGGGGGACGAGATGGATTTTTACGTTGCATAGTGATCAAAGCTTCCTAGGTACTCCAGACCCGCCTGGTAGCAAAACTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10555 lncRNA upstream 181 10220344 ~ 10222076 (+) True G8651
TU10493 lncRNA upstream 84691 10137334 ~ 10137566 (+) True G8600
TU10165 lncRNA upstream 87990 10119010 ~ 10134267 (+) True G8304
TU10148 lncRNA upstream 138590 10081168 ~ 10083667 (+) True G8295
TU10094 lncRNA upstream 169181 10051041 ~ 10053076 (+) True G8253
TU10603 lncRNA downstream 75271 10299882 ~ 10301188 (+) False G8695
TU10604 lncRNA downstream 75271 10299882 ~ 10300236 (+) True G8695
TU10676 lncRNA downstream 192732 10417343 ~ 10420536 (+) True G8764
TU10762 lncRNA downstream 336533 10561144 ~ 10562327 (+) True G8846
TU10788 lncRNA downstream 392618 10617229 ~ 10671287 (+) True G8871
XM_021618308.2 mRNA upstream 59309 10140230 ~ 10162948 (+) False gipc3
XM_021587979.2 mRNA upstream 114369 10104207 ~ 10107888 (+) True lim2.2
XM_036939156.1 mRNA upstream 114386 10104169 ~ 10107871 (+) False lim2.2
XM_021617595.2 mRNA upstream 120620 10096944 ~ 10101637 (+) False asb3
XM_036940763.1 mRNA downstream 1208491 11433102 ~ 11492490 (+) False LOC110523899
XM_036940849.1 mRNA downstream 1208491 11433102 ~ 11492490 (+) False LOC110523899
XM_036940803.1 mRNA downstream 1208492 11433103 ~ 11492489 (+) False LOC110523899
XM_036940911.1 mRNA downstream 1208492 11433103 ~ 11492489 (+) False LOC110523899
XM_036940953.1 mRNA downstream 1208497 11433108 ~ 11514427 (+) False LOC110523899
TU10501 other upstream 60971 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 230715 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 237793 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 762304 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1966379 8255142 ~ 8255878 (+) True LOC110505168
TU11995 other downstream 1252053 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3014002 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 3404252 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 3405425 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 3967845 14192456 ~ 14208014 (+) True LOC110486057

Expression Profile