RNA id: TU11910


Basic Information

Item Value
RNA id TU11910
length 742
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G9935
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11300418 ~ 11301310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaatagactatgtacagctgcagcgatcggttagctgctcagatagcagatgtttgaagttggtgagggagataaaagtctccaacttcagcgatttttgcaattcgttccaatcacaggcagcagagaactggaacgaaaggcggccaaatgaggtgttggctttagggatgatcagtgagatacacctgctggagcgcgtgctacggatgggtgttgccatcgtaaccagtgaactgagataaggcggagctttacctagcatggacttgtagatgacctggagccagtgggtctggcgacgaatatgtagcgagggccagccgactagagcatacaagtcgcagtggtgggtggtataaggtgctttagtgacaaaacggatggcactgtgataaactgcatccagtttgctgagtagagtgttggaagcaattttgtagatgacatcgccgaagtcgaggatcggtaggatagtcagttttactagggtaagtttggcggcgtgagtgaaggaggctttgtcaggcgtgcgggtgcaggcagcgaacggttgaaaagcatgcatttggttttactagcgtttaagagcagttggaggccatggaaggagtgctgtatggcattgaagctcgtttggaggttagatagcacagtgtccaaggacgggccggaagtatatagaatggtgtcgtctgcgtagaggtggatcagggaatcgcccgcagcatgagaaacatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11909 lncRNA upstream 1447 11298744 ~ 11298971 (+) True G9934
TU11904 lncRNA upstream 9730 11290488 ~ 11290688 (+) True G9929
TU11895 lncRNA upstream 24596 11275521 ~ 11275822 (+) True G9920
TU11888 lncRNA upstream 40363 11259749 ~ 11260055 (+) True G9913
TU11884 lncRNA upstream 47161 11252942 ~ 11253257 (+) True G9909
TU11870 lncRNA downstream 12002 11313312 ~ 11314922 (+) False G9895
TU11864 lncRNA downstream 12562 11313872 ~ 11314217 (+) False G9895
TU11865 lncRNA downstream 12562 11313872 ~ 11314558 (+) False G9895
TU11867 lncRNA downstream 12562 11313872 ~ 11314922 (+) True G9895
TU11929 lncRNA downstream 35982 11337292 ~ 11338110 (+) True G9953
XM_021618308.2 mRNA upstream 1137470 10140230 ~ 10162948 (+) False gipc3
XM_021587979.2 mRNA upstream 1192530 10104207 ~ 10107888 (+) True lim2.2
XM_036939156.1 mRNA upstream 1192547 10104169 ~ 10107871 (+) False lim2.2
XM_021617595.2 mRNA upstream 1198781 10096944 ~ 10101637 (+) False asb3
XM_036940763.1 mRNA downstream 131792 11433102 ~ 11492490 (+) False LOC110523899
XM_036940849.1 mRNA downstream 131792 11433102 ~ 11492490 (+) False LOC110523899
XM_036940803.1 mRNA downstream 131793 11433103 ~ 11492489 (+) False LOC110523899
XM_036940911.1 mRNA downstream 131793 11433103 ~ 11492489 (+) False LOC110523899
XM_036940953.1 mRNA downstream 131798 11433108 ~ 11514427 (+) False LOC110523899
TU10501 other upstream 1139132 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1308876 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1315954 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 1840465 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 3044540 8255142 ~ 8255878 (+) True LOC110505168
TU11995 other downstream 175354 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 1937303 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 2327553 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 2328726 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2891146 14192456 ~ 14208014 (+) True LOC110486057

Expression Profile