RNA id: TU11931


Basic Information

Item Value
RNA id TU11931
length 482
lncRNA type intronic
GC content 0.43
exon number 2
gene id G9955
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11343014 ~ 11344023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtaggctatattacatggatttactgtgaaggtgtaggctatattacatggattcattgtgatggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgatggtgtaggctatattacatggattcattgtgatggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgatggtgtaggctatattacatggatttactgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatggattcattgtgaaggtgtaggctatattacatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11929 lncRNA upstream 4904 11337292 ~ 11338110 (+) True G9953
TU11870 lncRNA upstream 28092 11313312 ~ 11314922 (+) False G9895
TU11867 lncRNA upstream 28092 11313872 ~ 11314922 (+) True G9895
TU11865 lncRNA upstream 28456 11313872 ~ 11314558 (+) False G9895
TU11864 lncRNA upstream 28797 11313872 ~ 11314217 (+) False G9895
TU11946 lncRNA downstream 15264 11359287 ~ 11359781 (+) False G9970
TU11947 lncRNA downstream 15264 11359287 ~ 11360838 (+) False G9970
TU11948 lncRNA downstream 15264 11359287 ~ 11360103 (+) True G9970
TU11960 lncRNA downstream 31400 11375423 ~ 11376798 (+) True G9980
TU12210 lncRNA downstream 171162 11515185 ~ 11515414 (+) True G10208
XM_021618308.2 mRNA upstream 1180066 10140230 ~ 10162948 (+) False gipc3
XM_021587979.2 mRNA upstream 1235126 10104207 ~ 10107888 (+) True lim2.2
XM_036939156.1 mRNA upstream 1235143 10104169 ~ 10107871 (+) False lim2.2
XM_021617595.2 mRNA upstream 1241377 10096944 ~ 10101637 (+) False asb3
XM_036940763.1 mRNA downstream 89079 11433102 ~ 11492490 (+) False LOC110523899
XM_036940849.1 mRNA downstream 89079 11433102 ~ 11492490 (+) False LOC110523899
XM_036940803.1 mRNA downstream 89080 11433103 ~ 11492489 (+) False LOC110523899
XM_036940911.1 mRNA downstream 89080 11433103 ~ 11492489 (+) False LOC110523899
XM_036940953.1 mRNA downstream 89085 11433108 ~ 11514427 (+) False LOC110523899
TU10501 other upstream 1181728 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1351472 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1358550 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 1883061 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 3087136 8255142 ~ 8255878 (+) True LOC110505168
TU11995 other downstream 132641 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 1894590 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 2284840 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 2286013 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2848433 14192456 ~ 14208014 (+) True LOC110486057

Expression Profile