RNA id: TU11946


Basic Information

Item Value
RNA id TU11946
length 335
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G9970
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11359287 ~ 11360838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGACCTGCAGGCTGCAGAAGGAGCAGGAGATCAGCGGGCTGGTGCAGTCTTCTCCCGTGTGGGAGTTGGAGGGCAGCGGCTCTGTGTTGTCCGGCCCGGCGCTGAAGCACATCTCTGGGACCAGCGGGTGGGTGCGGCTGCCGCAGCCGGGAGTGTGGGGGTGGTTGGGGGCACTGGGGCTGTCAGACAGGTACAGAGAGTCCTTCTGGGGCTGGATGAAACAGGGGAAGGAGGTTACATAACTTCCGGGGCTGGATGAAACAGGGGAAGGAGGTTACTTAACGTCTGGGGCTGGATGAAACAGGGGAAGGAGGTTACATAACTTCCGGGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11931 lncRNA upstream 15264 11343014 ~ 11344023 (+) True G9955
TU11929 lncRNA upstream 21177 11337292 ~ 11338110 (+) True G9953
TU11870 lncRNA upstream 44365 11313312 ~ 11314922 (+) False G9895
TU11960 lncRNA downstream 15642 11375423 ~ 11376798 (+) True G9980
TU12210 lncRNA downstream 155404 11515185 ~ 11515414 (+) True G10208
TU12226 lncRNA downstream 174520 11534301 ~ 11534536 (+) True G10223
TU12229 lncRNA downstream 177611 11537392 ~ 11537763 (+) True G10226
TU12239 lncRNA downstream 181958 11541739 ~ 11542096 (+) True G10236
XM_021618308.2 mRNA upstream 1196339 10140230 ~ 10162948 (+) False gipc3
XM_021587979.2 mRNA upstream 1251399 10104207 ~ 10107888 (+) True lim2.2
XM_036939156.1 mRNA upstream 1251416 10104169 ~ 10107871 (+) False lim2.2
XM_021617595.2 mRNA upstream 1257650 10096944 ~ 10101637 (+) False asb3
XM_036940763.1 mRNA downstream 73321 11433102 ~ 11492490 (+) False LOC110523899
XM_036940849.1 mRNA downstream 73321 11433102 ~ 11492490 (+) False LOC110523899
XM_036940803.1 mRNA downstream 73322 11433103 ~ 11492489 (+) False LOC110523899
XM_036940911.1 mRNA downstream 73322 11433103 ~ 11492489 (+) False LOC110523899
XM_036940953.1 mRNA downstream 73327 11433108 ~ 11514427 (+) False LOC110523899
TU10501 other upstream 1198001 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1367745 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1374823 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 1899334 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 3103409 8255142 ~ 8255878 (+) True LOC110505168
TU11995 other downstream 116883 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 1878832 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 2269082 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 2270255 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2832675 14192456 ~ 14208014 (+) True LOC110486057

Expression Profile