RNA id: TU12229


Basic Information

Item Value
RNA id TU12229
length 372
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G10226
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11537392 ~ 11537763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcattagagttaccagcctcagaaattgcagcccaaataaatgcttcacagagttcaagtaacagacacatctcaacatcagccgttcagaggagactgcgtgaattaggccttcatggttgaattgctgcaaagaaaccactactaaaggacaccaataagaagaagatactttttttgggccaagaaacacgagcaatggacattagacctgtggaaatctgtactttggtctgatgagtccaaatttgagatttttgatccaactaccgtgtctttgtgagacgcagagtaggtgaacggatgatctctgcatgtgtggttcccaccatcaagcatggaggaggaggtgtgatggtgtggaggcgCT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12226 lncRNA upstream 2856 11534301 ~ 11534536 (+) True G10223
TU12210 lncRNA upstream 21978 11515185 ~ 11515414 (+) True G10208
TU11960 lncRNA upstream 160594 11375423 ~ 11376798 (+) True G9980
TU11947 lncRNA upstream 176554 11359287 ~ 11360838 (+) False G9970
TU11948 lncRNA upstream 177289 11359287 ~ 11360103 (+) True G9970
TU12239 lncRNA downstream 3976 11541739 ~ 11542096 (+) True G10236
TU12244 lncRNA downstream 6940 11544703 ~ 11544905 (+) True G10241
TU12251 lncRNA downstream 11794 11549557 ~ 11549791 (+) True G10247
TU12270 lncRNA downstream 25794 11563557 ~ 11563781 (+) True G10265
TU12282 lncRNA downstream 35101 11572864 ~ 11573437 (+) True G10277
XM_036940953.1 mRNA upstream 22965 11433108 ~ 11514427 (+) False LOC110523899
XM_036941002.1 mRNA upstream 22965 11433109 ~ 11514427 (+) False LOC110523899
XM_036940849.1 mRNA upstream 44902 11433102 ~ 11492490 (+) False LOC110523899
XM_021618773.1 mRNA downstream 126845 11664608 ~ 11666692 (+) True LOC110534079
XM_036941304.1 mRNA downstream 307956 11845719 ~ 11872791 (+) False ccdc50
XM_036941268.1 mRNA downstream 307956 11845719 ~ 11872796 (+) False ccdc50
XM_036941195.1 mRNA downstream 307958 11845721 ~ 11879266 (+) False ccdc50
XM_036941231.1 mRNA downstream 307959 11845722 ~ 11879266 (+) False ccdc50
TU11995 other upstream 23010 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 1376106 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1545850 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1552928 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 2077439 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 1700850 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 2091100 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 2092273 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2654693 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 3141587 14679350 ~ 14679578 (+) True G13380

Expression Profile