RNA id: TU12270


Basic Information

Item Value
RNA id TU12270
length 225
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G10265
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11563557 ~ 11563781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttatgttcagtaatgttttgcttccaaaacgtCCGGTGAttttattcatccaagctactcaatactgccccccagctaTAAGAAGTTAAGCACACCAGCcagttggtctgtgcatgctctgaggacgcagctagggatgccatctgggccggcagccttgcgagggttaacacctttAAATGTCTTtctcacgtcggccacagagaaggagatggagggcccgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12251 lncRNA upstream 13766 11549557 ~ 11549791 (+) True G10247
TU12244 lncRNA upstream 18652 11544703 ~ 11544905 (+) True G10241
TU12239 lncRNA upstream 21461 11541739 ~ 11542096 (+) True G10236
TU12229 lncRNA upstream 25794 11537392 ~ 11537763 (+) True G10226
TU12226 lncRNA upstream 29021 11534301 ~ 11534536 (+) True G10223
TU12282 lncRNA downstream 9083 11572864 ~ 11573437 (+) True G10277
TU12318 lncRNA downstream 57511 11621292 ~ 11621566 (+) True G10313
TU12322 lncRNA downstream 62314 11626095 ~ 11626310 (+) True G10317
TU12333 lncRNA downstream 68499 11632280 ~ 11632580 (+) True G10328
TU12350 lncRNA downstream 81170 11644951 ~ 11645742 (+) True G10342
XM_036940953.1 mRNA upstream 49130 11433108 ~ 11514427 (+) False LOC110523899
XM_036941002.1 mRNA upstream 49130 11433109 ~ 11514427 (+) False LOC110523899
XM_036940849.1 mRNA upstream 71067 11433102 ~ 11492490 (+) False LOC110523899
XM_021618773.1 mRNA downstream 100827 11664608 ~ 11666692 (+) True LOC110534079
XM_036941304.1 mRNA downstream 281938 11845719 ~ 11872791 (+) False ccdc50
XM_036941268.1 mRNA downstream 281938 11845719 ~ 11872796 (+) False ccdc50
XM_036941195.1 mRNA downstream 281940 11845721 ~ 11879266 (+) False ccdc50
XM_036941231.1 mRNA downstream 281941 11845722 ~ 11879266 (+) False ccdc50
TU11995 other upstream 49175 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 1402271 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1572015 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1579093 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 2103604 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 1674832 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 2065082 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 2066255 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2628675 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 3115569 14679350 ~ 14679578 (+) True G13380

Expression Profile