RNA id: TU12333


Basic Information

Item Value
RNA id TU12333
length 301
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G10328
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11632280 ~ 11632580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtggaggctatatacagggggtaccagtacagagtcaatgtggaggctatatacagggggtaccagtacagagtcaatgtggaggctatatgcagggggtaccagtacagagtcaatgtgtgggggcaccggttagaggtaattgaggtaatatggacatgtaggtagaattaaagtgactatgcatagataacaaacagagagtagcagcagcgtaaaagaggggtctgggtagccctttgattagctgttcaggagtcttatggcttgggggtagaagctgttaagaagccttttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12322 lncRNA upstream 5970 11626095 ~ 11626310 (+) True G10317
TU12318 lncRNA upstream 10714 11621292 ~ 11621566 (+) True G10313
TU12282 lncRNA upstream 58843 11572864 ~ 11573437 (+) True G10277
TU12270 lncRNA upstream 68499 11563557 ~ 11563781 (+) True G10265
TU12251 lncRNA upstream 82489 11549557 ~ 11549791 (+) True G10247
TU12350 lncRNA downstream 12371 11644951 ~ 11645742 (+) True G10342
TU12356 lncRNA downstream 17209 11649789 ~ 11650058 (+) True G10348
TU12392 lncRNA downstream 58899 11691479 ~ 11691832 (+) True G10381
TU12426 lncRNA downstream 98445 11731025 ~ 11731290 (+) True G10414
TU12455 lncRNA downstream 136232 11768812 ~ 11769119 (+) True G10441
XM_036940953.1 mRNA upstream 117853 11433108 ~ 11514427 (+) False LOC110523899
XM_036941002.1 mRNA upstream 117853 11433109 ~ 11514427 (+) False LOC110523899
XM_036940849.1 mRNA upstream 139790 11433102 ~ 11492490 (+) False LOC110523899
XM_021618773.1 mRNA downstream 32028 11664608 ~ 11666692 (+) True LOC110534079
XM_036941304.1 mRNA downstream 213139 11845719 ~ 11872791 (+) False ccdc50
XM_036941268.1 mRNA downstream 213139 11845719 ~ 11872796 (+) False ccdc50
XM_036941195.1 mRNA downstream 213141 11845721 ~ 11879266 (+) False ccdc50
XM_036941231.1 mRNA downstream 213142 11845722 ~ 11879266 (+) False ccdc50
TU11995 other upstream 117898 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 1470994 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1640738 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1647816 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 2172327 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 1606033 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 1996283 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 1997456 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2559876 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 3046770 14679350 ~ 14679578 (+) True G13380

Expression Profile