RNA id: TU12649


Basic Information

Item Value
RNA id TU12649
length 3536
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G10600
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12078158 ~ 12081746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTCATGTTTTAAAAATGtaaggatagccaggggcacacaacATTGACATAATTTACAAGCAAAACATGTgattagtgagtccgccagatcagaggtagtagggatgaccagggttttTCTCTTGATAAGTACGTGAATTGGAGCGTTTCAGTCagagtacttttggatgtcagggacaatgtatggagtaaaatgtacattattttctttaggaatgtagttaaGTAACAGTTGTCcataatataaatagtaaagtacagatacccaaaaaacgacttacaCTTCTgttcctgcccataccataacccctccacggggcactctgttcacaacactgacatcagcaaaccactcgtccACACGGCACCAGACACGTGCGGTtatggttggacgtactgccaaattctctaaaacgatgtgggaggtggcttatggtatagAAATGAACATTCcgttatctggcaacagctctggtggacatttctgcagtcagcgtgccaactgcacactccctcatttTAGAGTAGACATTTTATTGTCCCCTGTataaatgatcatgctgtttaattagcttcttgatatgtcacacctgtcaagtggacaGGTTATcctggaaaaggagaaatgctcactaacaggaatgtaaaacatttgtgcataacattttagagaaatattgtttttgtgcgtatggaacatttctgggatcttttatttcagctcatgaaacatgggaccaacactttacatgttgcatgaaatgttttgttcagtgtagatacacatgaccaaaggtatttggacacctgctcgttgaacatctcattcaaaaatcatgggcattaatgtggagttggtcccccctttgctgctataacagcctccactcttctgggaaggctttccactagatgttggaacattgcagaggggacttgcttccattcagccacaagagcattagtgaggtcaggcactgatgttgagcgattaggcctggcttgcagtccgTGTTCCTTCCCCaagctgttgccacaaagttgtaaaCTCAGAATAATCTAGTATGTCATTGTAGGCTGTGGCGTTTTCCTTCAATGGACCTAAGGGGCCCATTCTGaaaaatgaaaaacagccccaggccattacTCCTCTTCCACcacactttacagttggcactatacatttgGGCAGGTTAagagaaatttgacaaactgacttattggaaaggtggcatcctatgacggtgccacgttgaaagtcactgagctcttcagtaaggcattctaccgccaatgtttgtctatggagattgcatggccttgtgctcaatgttatacacctgtcagcaacaggtgtggctgaaatagccaaatccactaattagAAGGGGTGTCCTCATTTGTGTATTTTGTTTATGTACAGTACtggtcaaaagttgacacacctacttatttaagggtttatttttttttactattttctacattgtagaataatagcgaagacatcaaaactatgaaataacacatatggaaggtctagtgattgtggaggccaggtcatctgacgcagcactccatcactcttcttggtcaaatagcccctctacagcctggagatgtgttgggtcattgtcctgttgaaaaacaaatgatcgtcccactaagcgcaaatcaggtgggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgcctggaattctaaataaatcactgacactgtcaccagcaaagcaccatcacacctcctcctccatgcttcacagtggaaaccacacatgcggagatcatccgttcacctactctgtgtctcacaaagacacagcggttggaaccaaaaatctccaatttggactcatcagaccaaaggacagatttccaccggtctaatttaCATTGCTcacgtttcttggcccaagcaggtctcttctacttattggtgtcctttagtagtggtttctttgcagcaatttgaccatgaaggcctgattcacacagtctcctctgaacagttgatgttgagatgtatctgttacttgaactccgaataatttatttgggctgaaatttctgaggctggtaactaattaacctatcctctgaagcagaggtaactctgggtcttcctttcctgtggcggttctcatgagatccagtttcattTTAAGACCTTCAagtattaaagtaatgatggactgtcatttctctttgcttatttgacctgttcttgctataatatggacttgctcttttaccaaatagggctatattctgtataccacgcctaccttgtcacaaaacaactgattggctcaaacgcattaagaaggaaagaaattccacaaattaacaaggcacacctgttaattgaaatgcattccaggtgactacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaagacaaagggtggctactttgaagaatctcaaatatatttggattcggataacacttttttggttactacataattccatatgtgttatttcatagttgtgatgtcttcactattattctacaatgtagaaaatagtaaagataaagaaaaacccttgaatgagtaggtgttttgactggtactgtagctgTGCAGCaaggctccccatccaacctgacagagcttgagaggatctgcagagaagaatgggagaaactaaccaaatacaggtgtgccacgcttgtagcttcatacccaagaagactcaaggctgtaatcgctgccaaaggtgcttcaacaaagtactgagtaaagggtctgaatacttatgtgaaatgtattattttctaaatgttttatatatactttctgaatgcgctgtacaTCTCTTTCTTGACTTCTCAAGTTATACCATTTTCGTTCCTTTAAATCATTTCTGTCCGCAACAACATCTAAGGCTGCTGTGATCAGTTTTTGTTGTTTATAAATTAGACAAAATgtcttaaaaacctgtttttgttttgtcattatggggtattgtgtgtagattgacgagggaataaaaaacatatttaagaAACATTACtacaaggctgtaacctaacaaaatgtggggaaagtaaaggggtcggaatactttcagaaggcactatctgtatgtagctagtgagtgtgtgtgcgccaTTGCATTCAAAGGTATGTGTGAGCACACACATGCCACGTTACGTACTATGTCTTcaaaaggtgtgtgtgttcatgtatgcATATGTGTGATAACCGTGTGTGCCTATGCTTTTACACTTCACAattgtgtgttcgtgtgtgtgcacGCCATGTTATGTCCCTTCACATCTTACCCGGGGGATGAGGCTGCTGCTGTTGACTCGTCTGAAGCGTCTCTGGAGGGCGTCGTACTCCATGTCGTTGACATCTGCCTTCAGCTGCTCCACTTTCTTCCTCTCCATGAGCAGCTCCTTCAGTAGACGCTCCATCCGGGCCCTCTGGTGCAGCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12647 lncRNA upstream 29250 12046142 ~ 12048908 (+) True G10598
TU12544 lncRNA upstream 176194 11901734 ~ 11901964 (+) True G10521
TU12540 lncRNA upstream 178102 11899719 ~ 11900056 (+) True G10519
TU12532 lncRNA upstream 185381 11892415 ~ 11892777 (+) True G10512
TU12529 lncRNA upstream 187579 11890172 ~ 11890579 (+) True G10509
TU12667 lncRNA downstream 1837 12083583 ~ 12084503 (+) True G10618
TU12716 lncRNA downstream 84108 12165854 ~ 12166761 (+) True G10657
TU12753 lncRNA downstream 129997 12211743 ~ 12213285 (+) True G10691
TU12755 lncRNA downstream 135610 12217356 ~ 12217585 (+) True G10692
TU13111 lncRNA downstream 230977 12312723 ~ 12318190 (+) True G11015
XM_021619978.2 mRNA upstream 5471 12056808 ~ 12072687 (+) True LOC110535080
XM_021619755.2 mRNA upstream 34341 12037725 ~ 12043817 (+) True cpox
XM_021619656.2 mRNA upstream 53082 11922576 ~ 12025076 (+) True LOC110534688
XM_021619544.2 mRNA upstream 171445 11903691 ~ 11906713 (+) True LOC110534540
XM_036941231.1 mRNA upstream 198892 11845722 ~ 11879266 (+) False ccdc50
XM_021620082.2 mRNA downstream 33340 12115086 ~ 12146128 (+) False LOC110535183
XM_021620238.2 mRNA downstream 33340 12115086 ~ 12147336 (+) False LOC110535183
XM_021620159.2 mRNA downstream 37084 12118830 ~ 12146128 (+) True LOC110535183
XM_036942469.1 mRNA downstream 72676 12154422 ~ 12165172 (+) False mindy4
XM_036942437.1 mRNA downstream 72678 12154424 ~ 12165172 (+) True mindy4
TU11995 other upstream 563776 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 1916872 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 2086616 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 2093694 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 2618205 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 1156867 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 1547117 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 1548290 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2110710 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 2597604 14679350 ~ 14679578 (+) True G13380

Expression Profile