RNA id: TU13192


Basic Information

Item Value
RNA id TU13192
length 280
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G11089
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12342007 ~ 12342286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctatatgtcccataaacatcacaattgggtctttttcccgattaaatccgtcattgtatacccaaaatgtcatttgctgaaggccagtctgatgctgcaaaaagtccatttacaagacgcaacgtcactttttaaaattacaaaagtcgcctataaacttttacaaatcacttcaaacgacgtttctaaaccaactttaggtattaataaacgttaatgatgtatcaaattgatcacggggcgatctgtattcgatagcagcaagtctggaaaacatcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13111 lncRNA upstream 23817 12312723 ~ 12318190 (+) True G11015
TU12755 lncRNA upstream 124422 12217356 ~ 12217585 (+) True G10692
TU12753 lncRNA upstream 128722 12211743 ~ 12213285 (+) True G10691
TU12716 lncRNA upstream 175246 12165854 ~ 12166761 (+) True G10657
TU12667 lncRNA upstream 257504 12083583 ~ 12084503 (+) True G10618
TU13202 lncRNA downstream 12626 12354912 ~ 12355130 (+) True G11099
TU13204 lncRNA downstream 15641 12357927 ~ 12358142 (+) True G11101
TU13205 lncRNA downstream 16245 12358531 ~ 12358851 (+) True G11102
TU13206 lncRNA downstream 16941 12359227 ~ 12359453 (+) True G11103
TU13230 lncRNA downstream 68311 12410597 ~ 12410836 (+) True G11127
XM_036989306.1 mRNA upstream 29368 12257968 ~ 12312639 (+) True LOC110525067
LOC110535487 mRNA upstream 88476 12250169 ~ 12253531 (+) True LOC110535487
XM_036942469.1 mRNA upstream 176835 12154422 ~ 12165172 (+) False mindy4
XM_036942437.1 mRNA upstream 176835 12154424 ~ 12165172 (+) True mindy4
XM_021620159.2 mRNA upstream 195879 12118830 ~ 12146128 (+) True LOC110535183
XM_021621168.2 mRNA downstream 119081 12461367 ~ 12473058 (+) False armh1
XM_021621329.2 mRNA downstream 119081 12461367 ~ 12473058 (+) False armh1
XM_036943199.1 mRNA downstream 142400 12484686 ~ 12496762 (+) False LOC110536107
XM_021621786.2 mRNA downstream 143352 12485638 ~ 12496762 (+) False LOC110536107
XM_036943345.1 mRNA downstream 143430 12485716 ~ 12496762 (+) False LOC110536107
TU11995 other upstream 827625 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 2180721 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 2350465 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 2357543 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 2882054 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 896327 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 1286577 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 1287750 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 1850170 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 2337064 14679350 ~ 14679578 (+) True G13380

Expression Profile