RNA id: TU13202


Basic Information

Item Value
RNA id TU13202
length 219
lncRNA type intronic
GC content 0.41
exon number 1
gene id G11099
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12354912 ~ 12355130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGGGAGTAAATGTACAACACATGGTACTGTAGTGTAGACACAGCCATGCAGTAAGACCCAAAGGAAGGAGTTAAAGTTGAAGGATGTTGCTTCTGTTTTGTGACAATGGGGGTAAATGTGACAGAGTTGTTGGCTACTGTGTATAAAAACAGACCGGAATACACACGAATgcatacacaagcacacacacacgcgcacacacacacacacgtaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13192 lncRNA upstream 12626 12342007 ~ 12342286 (+) True G11089
TU13111 lncRNA upstream 36722 12312723 ~ 12318190 (+) True G11015
TU12755 lncRNA upstream 137327 12217356 ~ 12217585 (+) True G10692
TU12753 lncRNA upstream 141627 12211743 ~ 12213285 (+) True G10691
TU12716 lncRNA upstream 188151 12165854 ~ 12166761 (+) True G10657
TU13204 lncRNA downstream 2797 12357927 ~ 12358142 (+) True G11101
TU13205 lncRNA downstream 3401 12358531 ~ 12358851 (+) True G11102
TU13206 lncRNA downstream 4097 12359227 ~ 12359453 (+) True G11103
TU13230 lncRNA downstream 55467 12410597 ~ 12410836 (+) True G11127
TU13233 lncRNA downstream 60181 12415311 ~ 12416032 (+) True G11130
XM_036989306.1 mRNA upstream 42273 12257968 ~ 12312639 (+) True LOC110525067
LOC110535487 mRNA upstream 101381 12250169 ~ 12253531 (+) True LOC110535487
XM_036942469.1 mRNA upstream 189740 12154422 ~ 12165172 (+) False mindy4
XM_036942437.1 mRNA upstream 189740 12154424 ~ 12165172 (+) True mindy4
XM_021620159.2 mRNA upstream 208784 12118830 ~ 12146128 (+) True LOC110535183
XM_021621168.2 mRNA downstream 106237 12461367 ~ 12473058 (+) False armh1
XM_021621329.2 mRNA downstream 106237 12461367 ~ 12473058 (+) False armh1
XM_036943199.1 mRNA downstream 129556 12484686 ~ 12496762 (+) False LOC110536107
XM_021621786.2 mRNA downstream 130508 12485638 ~ 12496762 (+) False LOC110536107
XM_036943345.1 mRNA downstream 130586 12485716 ~ 12496762 (+) False LOC110536107
TU11995 other upstream 840530 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 2193626 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 2363370 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 2370448 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 2894959 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 883483 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 1273733 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 1274906 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 1837326 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 2324220 14679350 ~ 14679578 (+) True G13380

Expression Profile