RNA id: TU15842


Basic Information

Item Value
RNA id TU15842
length 220
lncRNA type intronic
GC content 0.37
exon number 1
gene id G13383
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14685493 ~ 14685712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAGGCTCTGCTTTAAACCACACTCCAAGAGTCTCTCTGCTTTAAACCACACTCCAGGAGTCTCTGCTTTAAACCAGGCTGCAGGAGGCTCTGCTTTAAACCACACTCCAAGAGTCTCTCTGCATTAAACCACACTCCAGGAGTCTCTCTGCTTTAAACCACACTCCAGGAGTCTCTCCTTTAAACCAGGCTGCAGGAGGCTCTGCTTTAAACCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15833 lncRNA upstream 18590 14666655 ~ 14666903 (+) True G13375
TU15828 lncRNA upstream 29128 14655775 ~ 14656365 (+) True G13371
TU15827 lncRNA upstream 30873 14654353 ~ 14654620 (+) True G13370
TU15822 lncRNA upstream 40652 14644591 ~ 14644841 (+) True G13366
TU15821 lncRNA upstream 41672 14643605 ~ 14643821 (+) True G13365
TU15845 lncRNA downstream 3325 14689037 ~ 14689301 (+) True G13386
TU15846 lncRNA downstream 4376 14690088 ~ 14690289 (+) True G13387
TU15848 lncRNA downstream 7480 14693192 ~ 14694338 (+) True G13389
TU15849 lncRNA downstream 11418 14697130 ~ 14697793 (+) True G13390
TU15858 lncRNA downstream 23439 14709151 ~ 14709439 (+) True G13395
XM_036947567.1 mRNA upstream 189645 14350545 ~ 14495848 (+) False LOC110486505
XM_036948336.1 mRNA downstream 308225 14993937 ~ 15003427 (+) True LOC110487584
XM_021559606.2 mRNA downstream 330426 15016138 ~ 15019092 (+) False LOC110487655
XM_036948429.1 mRNA downstream 330713 15016425 ~ 15019092 (+) True LOC110487655
NM_001160664.2 mRNA downstream 338707 15024419 ~ 15026535 (+) True elav1
XM_036948626.1 mRNA downstream 389472 15075184 ~ 15080304 (+) False LOC110487930
TU15839 other upstream 5466 14679698 ~ 14680027 (+) True G13381
TU15838 other upstream 5915 14679350 ~ 14679578 (+) True G13380
TU15077 other upstream 477479 14192456 ~ 14208014 (+) True LOC110486057
TU14688 other upstream 1053603 13630036 ~ 13631890 (+) False G12410
TU14679 other upstream 1054205 13628863 ~ 13631288 (+) False G12410
TU15850 other downstream 14464 14700176 ~ 14700730 (+) True G13391
TU15897 other downstream 126059 14811771 ~ 14812624 (+) True G13434
TU16116 other downstream 275842 14961554 ~ 14962003 (+) True G13639
TU16507 other downstream 774192 15459904 ~ 15467988 (+) True sass6
TU17062 other downstream 1009329 15695041 ~ 15715682 (+) True LOC110490510

Expression Profile