RNA id: TU15858


Basic Information

Item Value
RNA id TU15858
length 289
lncRNA type intronic
GC content 0.49
exon number 1
gene id G13395
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14709151 ~ 14709439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcgctcgctgtctctctctctcatatcagtctcctgagggaaaAGTGCAGGAGCCTTTGATCTGATCAGTGTTTTTTTTCCCCGAGGTTGAGGAATCTTGAAATGGGACGTGCTCTCCAATTAGTTTGGGTTAAATATTTCAGAGGCTACGGCAGCTATCCCTGTCTTTTCTTCTCCCTTTAGTGAGCGGCTTCCATGTTTCCATTGGTTCTCCTGCTGACACTACAGAGACAATAAAAACCCTCCTTGTAACGCGTATACTTGACTGAACGAACGGCAGCTAGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15849 lncRNA upstream 11358 14697130 ~ 14697793 (+) True G13390
TU15848 lncRNA upstream 14813 14693192 ~ 14694338 (+) True G13389
TU15846 lncRNA upstream 18862 14690088 ~ 14690289 (+) True G13387
TU15845 lncRNA upstream 19850 14689037 ~ 14689301 (+) True G13386
TU15842 lncRNA upstream 23439 14685493 ~ 14685712 (+) True G13383
TU15860 lncRNA downstream 12039 14721478 ~ 14721719 (+) True G13397
TU15877 lncRNA downstream 64698 14774137 ~ 14774452 (+) True G13414
TU15888 lncRNA downstream 84522 14793961 ~ 14794194 (+) True G13425
TU15889 lncRNA downstream 85059 14794498 ~ 14794874 (+) True G13426
TU15891 lncRNA downstream 87118 14796557 ~ 14796843 (+) True G13428
XM_036947567.1 mRNA upstream 213303 14350545 ~ 14495848 (+) False LOC110486505
XM_036948336.1 mRNA downstream 284498 14993937 ~ 15003427 (+) True LOC110487584
XM_021559606.2 mRNA downstream 306699 15016138 ~ 15019092 (+) False LOC110487655
XM_036948429.1 mRNA downstream 306986 15016425 ~ 15019092 (+) True LOC110487655
NM_001160664.2 mRNA downstream 314980 15024419 ~ 15026535 (+) True elav1
XM_036948626.1 mRNA downstream 365745 15075184 ~ 15080304 (+) False LOC110487930
TU15850 other upstream 8421 14700176 ~ 14700730 (+) True G13391
TU15839 other upstream 29124 14679698 ~ 14680027 (+) True G13381
TU15838 other upstream 29573 14679350 ~ 14679578 (+) True G13380
TU15077 other upstream 501137 14192456 ~ 14208014 (+) True LOC110486057
TU14688 other upstream 1077261 13630036 ~ 13631890 (+) False G12410
TU15897 other downstream 102332 14811771 ~ 14812624 (+) True G13434
TU16116 other downstream 252115 14961554 ~ 14962003 (+) True G13639
TU16507 other downstream 750465 15459904 ~ 15467988 (+) True sass6
TU17062 other downstream 985602 15695041 ~ 15715682 (+) True LOC110490510
TU18087 other downstream 1869647 16579086 ~ 16580882 (+) True LOC118941201

Expression Profile