RNA id: TU16106



Basic Information


Item Value
RNA id TU16106
length 236
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G13630
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14875368 ~ 14875603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTTCATGAGTTTCTGCTAACACTCCAGTTCAGTCAGAGTTTCATGAATTTCTGCTAACACTCCAGTTCAGTCAGAGTTTCATGAGTTTCTGCTAACACTCCAGTTCAGTCAGAGTTTCATGAGTTTCTGCTAACACTCCAGTTCAGTCAGAGTTTCATGAGTTTCTGCTAACACTCCAGTTCAGTCAGAGTTTCATGAGTTTCTGCTAACACTCCAGTTCAGTCAGAGTTTCATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU15933 lncRNA upstream 17449 14857295 ~ 14857919 (+) True G13468
TU15932 lncRNA upstream 18548 14856559 ~ 14856820 (+) True G13467
TU15930 lncRNA upstream 23807 14851285 ~ 14851561 (+) True G13465
TU15921 lncRNA upstream 40052 14835057 ~ 14835316 (+) True G13456
TU15915 lncRNA upstream 50278 14824862 ~ 14825090 (+) True G13450
TU16135 lncRNA downstream 33198 14908801 ~ 14909093 (+) True G13658
TU16138 lncRNA downstream 35315 14910918 ~ 14911348 (+) True G13661
TU16142 lncRNA downstream 41847 14917450 ~ 14918580 (+) True G13665
TU16113 lncRNA downstream 87143 14962746 ~ 14964478 (+) True G13637
TU16202 lncRNA downstream 129150 15004753 ~ 15005137 (+) True G13716
XM_036947567.1 mRNA upstream 379520 14350545 ~ 14495848 (+) False LOC110486505
XM_036948336.1 mRNA downstream 118334 14993937 ~ 15003427 (+) True LOC110487584
XM_021559606.2 mRNA downstream 140535 15016138 ~ 15019092 (+) False LOC110487655
XM_036948429.1 mRNA downstream 140822 15016425 ~ 15019092 (+) True LOC110487655
NM_001160664.2 mRNA downstream 148816 15024419 ~ 15026535 (+) True elav1
XM_036948626.1 mRNA downstream 199581 15075184 ~ 15080304 (+) False LOC110487930
TU15897 other upstream 62744 14811771 ~ 14812624 (+) True G13434
TU15850 other upstream 174638 14700176 ~ 14700730 (+) True G13391
TU15839 other upstream 195341 14679698 ~ 14680027 (+) True G13381
TU15838 other upstream 195790 14679350 ~ 14679578 (+) True G13380
TU15077 other upstream 667354 14192456 ~ 14208014 (+) True LOC110486057
TU16116 other downstream 85951 14961554 ~ 14962003 (+) True G13639
TU16507 other downstream 584301 15459904 ~ 15467988 (+) True sass6
TU17062 other downstream 819438 15695041 ~ 15715682 (+) True LOC110490510
TU18087 other downstream 1703483 16579086 ~ 16580882 (+) True LOC118941201
TU18393 other downstream 2040896 16916499 ~ 16920409 (+) True LOC110492606

Expression Profile