RNA id: TU18610


Basic Information

Item Value
RNA id TU18610
length 400
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G15865
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17257428 ~ 17257827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCTAAAGTGAGTAAGTAAAAATCATACAGGGGTAGTAGACAACAAGTGAAACTGAAGTGTGAACTTCCCTTGTAAGAACTTTTACTCAGTAGGCTAGACAGGAAGTGGTGAGACACAGAACACTGGCCTAAAACCAACCTATGTATGTACATTACCAGGATGACAATATTGCTGACTCATTCATGTTTATGGTTGTTAGTGTTTCATCTCAACCTACTTAAGAAATGGAAAATAAAATGTTTCTGATGACGGTGTTCACcttcaaattttttttttttaaatgttctttaAGGCGTGAATTCTGAATTCAGAGAATGGCATGTGTCTCAGAATGAATAGCTGTTTTAAAAGAACATCCAAATAGCATATTTAATCTCGTAGACCTGTGTATTTAACC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18638 lncRNA upstream 16811 17240391 ~ 17240617 (+) True G15891
TU18473 lncRNA upstream 121058 17134140 ~ 17136370 (+) True LOC110493316
TU18462 lncRNA upstream 284060 16973141 ~ 16973368 (+) True G15743
TU18435 lncRNA upstream 287205 16969905 ~ 16970223 (+) True G15717
TU18425 lncRNA upstream 300968 16956190 ~ 16956460 (+) True G15708
TU18649 lncRNA downstream 52058 17309885 ~ 17313925 (+) True LOC110494078
TU18676 lncRNA downstream 56739 17314566 ~ 17314970 (+) True G15928
TU18648 lncRNA downstream 86745 17344572 ~ 17347869 (+) True smim7
TU18651 lncRNA downstream 97868 17355695 ~ 17356974 (+) True LOC110494277
TU18656 lncRNA downstream 99874 17357701 ~ 17358053 (+) True G15909
XM_021568167.2 mRNA upstream 1168 17244353 ~ 17256260 (+) True LOC110493709
XM_036955227.1 mRNA upstream 121063 16982509 ~ 17136365 (+) False LOC110493316
XM_036955739.1 mRNA downstream 6126 17263953 ~ 17272050 (+) False klhl26
XM_021568458.2 mRNA downstream 6128 17263955 ~ 17272050 (+) False klhl26
XM_036955709.1 mRNA downstream 6157 17263984 ~ 17272050 (+) False klhl26
XM_021568373.2 mRNA downstream 6158 17263985 ~ 17272050 (+) False klhl26
XM_036955667.1 mRNA downstream 6159 17263986 ~ 17272050 (+) False klhl26
TU18429 other upstream 289638 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 337019 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 676546 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1541746 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1789440 15459904 ~ 15467988 (+) True sass6
TU19135 other downstream 396380 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 718137 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1624896 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 2307022 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 2310958 19568785 ~ 19575028 (+) True LOC110502506

Expression Profile