RNA id: TCONS_00026477


Basic Information

Item Value
RNA id TCONS_00026477
length 2573
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_013405
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21178721 ~ 21188768 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGCTATAAGCAACAAAAGCAGCACACAAGTTCAACTTCACACACACTGTGCGTTTGTCTTCCAGCAAGTCACCTGCGCTTCCAGCAATGGCCCTGTTCAAATCCAGCAAGATTTTGTCTAGTGTCGGGTCTCAGACCCCTGTTTTAGCAGTCTTACAGCTCCGGGCAAGctcATGGTGGACTGAGGTACAGATGGGACCCCCTGATCCCATCCTGGGGGTCACGGAGGCTTTTAAGCGTGACACCAACCCCAAGAAGATGAACCTTGGAGTTGGAGCTTATAGAGATGATCAGGGGAAGCCATTCGTCCTCAGCAGTGTTCGAAAGGCTGAAGCCCAGATTGCTGCTAAGAAGTTGGATAAAGAGTACCTTCCTATTGGAGGTTTGGCAGACTTTTCAAAGGCCTGTGTTCAGCTGGCTCTTGGACCTGATAACGAGGTCTTGAAGAGCGGCAGAAGCATCACTGTCCAGACTATCTCAGGAACTGGATCTCTACGTATTGGAGCTAACTTTGTGtcACGATTCCACAATGCGTCCCGGGATGTGTACCTGCCTAAACCCTCTTGGGGCAACCACACACCAGTCTTTAGAGATGCAGGCATGCAGCTAAAGGCTTACACCTACTATGAACCCAAAACCTGTGGCTTTAATCTTAAAGGAGCCTTGGATGACATTTCAAAAATCCCTGAGAAGAGTGTAATTCTTCTTCATGCCTGCGCTCATAATCCCACCGGAGTGGACCCCAGGCCTGAGCAGTGGAAAGAGATGGCTGCTCTGATCAAGAAAAGAAATCTCCTGGTGTTCTTTGACATGGCTTACCAGGGATTTGCCAGTGGCGACATTGATCGTGACGCTTGGGCTGTGCGTTATTTCATTGAGCAGGGCCACAACATTCTACTGTCCCAGTCTTTTGCTAAGAACATGGGCCTGTATGGTGAGCGTGTGGGAGGCTTCACAGTGGTTTGTAAGGATGCCGAAGAGGCCAAGCGTGTGGAATCTCAGCTGAAAATCCTCATTCGGCCCATCTACTCCAACCCACCCATGAATGGCGCTCGCATCGCCGCCACTATCCTCAACACACCTGAACTCTACAAAGAATGGCTTCAGGAGGTAAAAGGCATGGCTGACCGCATCATTAGGATGAGAGAGATGCTCGTTTCCAACCTTAAAAAGGAGGGCTCCACTCACAACTGGCAACATGTCACTGACCAGATCGGGATGTTCTGCTTCACTGGGCTCAAACCGGAACAGGTGGAGCGTCTGATTAATGAATTCTCTATATACATGACAAAAGATGGCCGGATTTCTGTGGCCGGAGTGACGTCTGCCAACGTGGAGTATCTTGCACATGCCATCCACGCCGTCACCAAGTGAAGCTAGCATCAAACGTAGTGATGATTTAATGTCTGTCAGGACCAGATAAGACATAGGATGAATGTAGACTTCCAGTTCACTTGATTTGGCATTATTAATGGTAATACATGACTGTGAATATGAGCCCTGCAATAAATTAAGACAGGATGCTTCCTttcaaaatgataaaaacaagctTTAAAGGATGTTGCTTATCATTGTTTCCTTTGTCGGAACTGATAAGAAGGTTTTTATGGTCTAAAAGTCTAACATGctttaaaaatctttttgtttttCAGACAAATGACTCTAAATGAGAATAATAACTCAGtatgaaataataacaataaccattTTGAATGATTACCCATATACTCATGTAACTGAAAGGAGTGCACTGATTTCATGTTTTGATGATTGCATCATCTTTGAATGACTGTTGCCAGTCTCATGTTCATTTCACCTAGAACTTTAGCACTTCTTCTAAACATAGTTATTGTGAGTTTGCTACTAGTGGTGGaagattgtccatagtgtgtgcaATATATTTGTTCTCATGCAGCTTGtcagatttattttacttttctggCTAGAATTTTTCATGCATCACACACAGATAGTTTCATAAATTGATATAGgcatttacattcattttgtgttttgttctggCCATTTAaagggtagttcactcaaaatttgtCACCCTCAAGACCTTCTAAatggtttgtttttttctactgaacACAAACGAAGATCCTTTTCAGATTATGAGAAATTGGTACCCATTGACATCTAAAACATTCAATAGCTTCTGGTTTCAACATTCTTCTGAAAGTCTTGTTGGGTGTTAAAAATGatgacaattacattttttttgagtgaactattaaTCTCATTCATCATGTGTTAAACATACTGCATGTGAACAAAATCAAATGAAGattcattttagaattaaaaCCTATTTGAAATTGTAACTGATATATCAGTGGTTAATGATGCTTTAAGAAAAGCTCTCACCTGTGTGAATCTTGATTACATAAACATGCACTTTGTgaggataaataaaacaaaagtgctGACGAATATATTTGTATAATTGTGTATTGTGTTCCTGTGGTTAATTGTATTTCCCTCAAGATTTCTCCAAAATGATGAAGTGTCATGAGTGGTGCTCTATGAAtcctatttaaatgaataaaagtgaGCTCAACAAAAa

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0006533 aspartate catabolic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function
GO:0016212 kynurenine-oxoglutarate transaminase activity molecular_function
GO:0004069 L-aspartate molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2703 Predicted to enable L-aspartate:2-oxoglutarate aminotransferase activity. Predicted to be involved in aspartate catabolic process. Predicted to act upstream of or within biosynthetic process and cellular amino acid metabolic process. Predicted to be located in mitochondrial matrix and plasma membrane. Predicted to be active in mitochondrion. Used to study developmental and epileptic encephalopathy 82 and early infantile epileptic encephalopathy. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 82. Orthologous to human GOT2 (glutamic-oxaloacetic transaminase 2).

Ensembl:

ensembl_id ENSDART00000060166

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026963 lncRNA downstream 10603 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA downstream 10603 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026461 lncRNA downstream 570484 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00027295 lncRNA downstream 858848 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026498 lncRNA upstream 743485 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 755437 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00027296 lncRNA upstream 1361827 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00027297 lncRNA upstream 1997961 23186729 ~ 23188209 (-) False XLOC_013428
TCONS_00027298 lncRNA upstream 1997961 23186729 ~ 23188268 (-) False XLOC_013428
TCONS_00026476 mRNA downstream 1047 21171465 ~ 21177674 (-) True XLOC_013404
TCONS_00026475 mRNA downstream 8457 21164591 ~ 21170264 (-) False XLOC_013403
TCONS_00026474 mRNA downstream 72753 21101835 ~ 21105968 (-) True XLOC_013402
TCONS_00026473 mRNA downstream 81058 21077528 ~ 21097663 (-) True XLOC_013401
TCONS_00026470 mRNA downstream 131141 20881462 ~ 21047580 (-) False XLOC_013400
TCONS_00026478 mRNA upstream 9994 21198762 ~ 21218851 (-) True XLOC_013406
TCONS_00026479 mRNA upstream 68493 21257261 ~ 21271373 (-) False XLOC_013407
TCONS_00026480 mRNA upstream 74444 21263212 ~ 21267103 (-) True XLOC_013407
TCONS_00026481 mRNA upstream 433646 21622414 ~ 21640389 (-) True XLOC_013408
TCONS_00026482 mRNA upstream 456541 21645309 ~ 21685055 (-) True XLOC_013409
TCONS_00026472 other downstream 154150 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026468 other downstream 332408 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026464 other downstream 544798 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026460 other downstream 584479 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026456 other downstream 618731 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026485 other upstream 523528 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026501 other upstream 895004 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026504 other upstream 1361827 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026513 other upstream 1550964 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026516 other upstream 1670711 22859479 ~ 22862467 (-) True XLOC_013427

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_03493064_03499971.mRNA True 1462 mRNA 0.49 10 CI01000013 3493064 ~ 3500131 (+)
bowfin (Amia calva) AMCG00020393 True 3051 mRNA 0.49 10 CM030127.1 17917969 ~ 17926416 (+)