RNA id: TU23984


Basic Information

Item Value
RNA id TU23984
length 1735
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G20557
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21310805 ~ 21312539 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTATTGTTGCCTTACGGAGTGCTGTTACAATTTTCCAAAATGCATATTTTGTAATTATTTATGAATAGAAAATGTATAGCCTAAGTAGTTTTGACTCAACAGCAGTCTGGACCTTTACATTTGTCCACTTTATAGGCTATGAGGACGGACATGTTGCCAAGACAGTGTTTTGGACCAAAGCCACCTCACCCACTTCACAACAGTGTAGGCTATTGTAGGTGACTGGGAACCAGAGGAATGTATTTGAAGAATGCTCTATGACTGATGAATTCATAACCCCACCTCGTTACACAGAATTCTTAGTTAGAACCAATTAAGCAACTTTTGTGCAAAGTTGTGAAATTCCTGTCTCCAGCCTAATAGTCAGGCATTGTTGCATTAAAGTGAATATagagagccttcagaaagtattcacagcccttgactttttccacaatttgttgtcttacagcctgaatttaaaattgattacatttagatttgttttgtcactggcctacacacaataccccataatgtcaaaagggaattatgtttttagaaatgtttacaaatgaataaaaaattcaaagctgaaatatcttgagtcagtatgtattcaacccctttgttgtggcaagcctaaataaacccaggagtaaaaatgtgctaaatAACAAGATAAGTTGCATGGAAATACTCTGTGTGCAACAATAGTGTTTAAAATGATGtagcccacacatacaattatctgtaaggttcctcagtcgagcattgaatttcaaacacagattcaactataatgtccagggaagttttccaaagtctcgcaaagaaggacacctattggtcgatgggtaaaaaaaaaatctgacattgtcacgtgagttggggtgggtattctatgttctatgttgtgtatttctatattttggccgggtagggttctcaatcagggacagctgtctatcgttgtctctgattgagaaccacacttagGCTgcgctttttcccacctgtgtttgtggtaagttgactttgtttagggcacatagcctttagcttcacggtttgtttttgtagtgtttattgttttgttcggtgtCATTTtccaaataaagagaaaatgtacgctcaccacactgcaccttggtcctcttcttttaacggccgtgacagacattgaatatccctttgagcatggtgaagttattaattacacgttggatggtgtatcaatgcacccagtcactacaaagatacagtcgtccttctTAAAtcaagggaaagggaaagggaaagaaaccgctcagggatttcatcataaggcccatggtgactttaaaacagttgcagagtttaatggctgtgataggagaaaactgaggatggatcaacaacattgtagttactacacaatactaacctaattgacagagtgaaaaaaaagtaagtctgtacagaataaaaatataccAAAAcatgcaataaggcactaaagtaaaactgcaaaaaatgtcaCAATGAAATtaactttgtcctgaatacaaagtgttatgtttggggaaaatccaactcAATACATCCCTgattaccactcttcatattttcaagcatggtggatgcatcatgttatgggtatgcttgtcatcgaaaaggactagggagttttttaggataaaaataaatggaaccaagctaagcacaggcaaaacccTAGAGGACATTAttttaaataataatgtgcaaatat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23878 lncRNA downstream 135634 21174484 ~ 21175171 (-) True G20456
TU23846 lncRNA downstream 189454 21120902 ~ 21121351 (-) True G20425
TU23844 lncRNA downstream 216283 21094323 ~ 21094522 (-) True G20423
TU23813 lncRNA downstream 221555 21085468 ~ 21089250 (-) False LOC118945319
TU24100 lncRNA upstream 44669 21357208 ~ 21357457 (-) True G20666
TU24102 lncRNA upstream 58225 21370764 ~ 21371028 (-) True G20668
TU24103 lncRNA upstream 58611 21371150 ~ 21371378 (-) True G20669
TU24112 lncRNA upstream 69913 21382452 ~ 21382704 (-) True G20678
TU24113 lncRNA upstream 71209 21383748 ~ 21384035 (-) True G20679
XR_005040883.1 mRNA downstream 68783 21232782 ~ 21242022 (-) True LOC118945781
LOC110511465 mRNA downstream 117648 21192344 ~ 21193157 (-) True LOC110511465
LOC110507379 mRNA downstream 177028 21128187 ~ 21133777 (-) True LOC110507379
XR_005040481.1 mRNA downstream 221629 21087368 ~ 21089176 (-) False LOC118945319
XM_036967735.1 mRNA downstream 305596 20988056 ~ 21005209 (-) False LOC110532071
XR_005040908.1 mRNA upstream 45196 21357735 ~ 21362639 (-) False LOC110507674
XM_036969142.1 mRNA upstream 45196 21357735 ~ 21362641 (-) False LOC110507674
XM_036968943.1 mRNA upstream 45196 21357735 ~ 21362790 (-) False LOC110507674
XM_036969020.1 mRNA upstream 45196 21357735 ~ 21362790 (-) False LOC110507674
XM_036969098.1 mRNA upstream 45196 21357735 ~ 21362790 (-) False LOC110507674
TU23826 other downstream 221555 21085298 ~ 21089250 (-) False LOC118945319
TU24399 other upstream 223394 21535933 ~ 21547773 (-) True LOC110507736
TU25520 other upstream 1069331 22381870 ~ 22382208 (-) True G21993
TU25921 other upstream 1527306 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 2311487 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 2510161 23822700 ~ 23826491 (-) True LOC110511130

Expression Profile