RNA id: TU27002


Basic Information

Item Value
RNA id TU27002
length 260
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G23397
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23626386 ~ 23626645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgtacacctatgtagatattccattaaaaatcagccgtttccagctgcaatagtcatttacaacattaacaatgtctacactgtatttcggatcaatttgatgttattttaatggacaaaaaatgtgcttttctttcaaaaacaaggtcatttctaagtgaccccaaacatttgaacggtggtgtatatttttttttatcttgctTTGTTAGCTCTTTTCCacattatgtctatctctgataaggaaagggctgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26986 lncRNA downstream 20552 23605524 ~ 23605834 (-) True G23381
TU26985 lncRNA downstream 21281 23604716 ~ 23605105 (-) True G23380
TU26948 lncRNA downstream 71317 23554861 ~ 23555069 (-) True G23343
TU26940 lncRNA downstream 81893 23544271 ~ 23544493 (-) True G23335
TU26936 lncRNA downstream 87138 23538952 ~ 23539248 (-) True G23331
TU27108 lncRNA upstream 79139 23705784 ~ 23705984 (-) True G23501
TU27125 lncRNA upstream 91875 23718520 ~ 23718838 (-) True G23518
TU27129 lncRNA upstream 93963 23720608 ~ 23720812 (-) True G23522
TU27375 lncRNA upstream 114635 23741280 ~ 23741509 (-) True G23742
TU27400 lncRNA upstream 142354 23768999 ~ 23769161 (-) True G23765
XM_021591923.2 mRNA downstream 6611 23321071 ~ 23619775 (-) False LOC110510575
XM_021591958.2 mRNA downstream 6611 23321071 ~ 23619775 (-) False LOC110510575
XM_021591998.2 mRNA downstream 6611 23321071 ~ 23619775 (-) False LOC110510575
XM_021592045.2 mRNA downstream 6611 23321071 ~ 23619775 (-) False LOC110510575
XR_002471552.2 mRNA downstream 669993 22921567 ~ 22956393 (-) False LOC110510264
XM_021592107.2 mRNA upstream 142648 23769293 ~ 23774865 (-) True LOC110510928
XM_036972413.1 mRNA upstream 195011 23821656 ~ 23861028 (-) False LOC110511130
XM_036972417.1 mRNA upstream 195011 23821656 ~ 23861029 (-) False LOC110511130
XM_021592530.2 mRNA upstream 315250 23941895 ~ 23945943 (-) True LOC110511707
XM_021592581.2 mRNA upstream 354570 23981215 ~ 24015777 (-) True LOC110511826
TU26999 other downstream 2037 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 783081 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1244178 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 2078613 21535933 ~ 21547773 (-) True LOC110507736
TU23832 other downstream 2537136 21085468 ~ 21089250 (-) False LOC118945319
TU27396 other upstream 196055 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 596262 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 925946 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 1237442 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 1301703 24928348 ~ 24938701 (-) False LOC118956210

Expression Profile