RNA id: TCONS_00026519


Basic Information

Item Value
RNA id TCONS_00026519
length 558
lncRNA type lincRNA
GC content 0.45
exon number 2
gene id XLOC_013430
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 23439462 ~ 23608028 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gccatattgttatttttattaagtgacattttatattttgtaatttggTTAAAGAAGAGATTAAATGAGATTatgttgtaaagaaaaaaaaaaaaacgtttcaaaGAATAAACGTGTTCATTTATAGTGAAAGGTATTTTAACAAGTTCCTTCCTTTGGCAGATCCAGTCATCTCATTCCCGCAGGTAAACTGTGCAATGCTTGTAAGAACGTGAAGCAAGAATACATGTTCTTTTTCCCCCATCTCTTTCCTCCGCTCTTAATTCCCCAGGCGGGGATGACAGACTGACAGGTTGCTCGAGGTCAGAGGAGCAGTGGCCCTTCTCTCCCTGGGACTGTGCTGATAGTCCATATAGGTCCCAGACACTCCTGGCTTCTTCGTGTGTTTTTTGCTGGATCCTTGCCGCCGACTCGACGGTGTACCAGCCTCCTTGGAGACAGGACAATGGGCGGGCTGCTGCGTTGCTGACTCGCACCTTTCTGGTCAACGCCTTTTTGCATCCCTGTGGGTCACAGATGCGGAAATCAGAGAAGGACCTTAAATGGGAGCAATTCTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194010

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027305 lncRNA downstream 159843 23401130 ~ 23403453 (-) False XLOC_013429
TCONS_00027304 lncRNA downstream 159843 23401130 ~ 23403453 (-) True XLOC_013429
TCONS_00027303 lncRNA downstream 367742 23186729 ~ 23195554 (-) True XLOC_013428
TCONS_00027302 lncRNA downstream 372394 23186729 ~ 23190902 (-) False XLOC_013428
TCONS_00027301 lncRNA downstream 373214 23186729 ~ 23190082 (-) False XLOC_013428
TCONS_00027311 lncRNA upstream 78547 23686575 ~ 23833010 (-) False XLOC_013431
TCONS_00027312 lncRNA upstream 78547 23686575 ~ 23833908 (-) False XLOC_013431
TCONS_00027313 lncRNA upstream 222237 23830265 ~ 23832976 (-) False XLOC_013431
TCONS_00026520 lncRNA upstream 222237 23830265 ~ 23833909 (-) True XLOC_013431
TCONS_00027314 lncRNA upstream 269451 23877479 ~ 23884654 (-) False XLOC_013433
TCONS_00026514 mRNA downstream 809659 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 809659 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026512 mRNA downstream 828294 22721551 ~ 22735002 (-) True XLOC_013425
TCONS_00026511 mRNA downstream 845623 22716708 ~ 22717673 (-) True XLOC_013424
TCONS_00026510 mRNA downstream 849894 22712683 ~ 22713402 (-) True XLOC_013423
TCONS_00026521 mRNA upstream 260622 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA upstream 262374 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA upstream 265427 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026532 mRNA upstream 1325445 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 1330664 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026516 other downstream 700829 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026513 other downstream 819930 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026504 other downstream 1011040 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026501 other downstream 1479410 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026485 other downstream 1843245 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026523 other upstream 265316 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026525 other upstream 665400 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other upstream 708153 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026527 other upstream 779991 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026529 other upstream 952159 24560187 ~ 24560397 (-) True XLOC_013437

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU90098 True 240 lncRNA 0.61 1 CI01000013 2154273 ~ 2154512 (-)