RNA id: TCONS_00027341


Basic Information

Item Value
RNA id TCONS_00027341
length 552
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_013438
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24736359 ~ 24759440 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCAACAGATTTCTTTATCAAATTTACAACATAAATTTGACTACAAAATCCACCCTGTTGCATTACTGCACAGGGTTTAAAGCTAAAAGATGATGAGTTCAGACATGTCTTTGGGAGTTAGGGAAGCTTTTAAAGAGGGGCTTGATCTGGGGGGCTTCAGATAATTAATTAAACACAACCAGGGGGAAGCTGATGACAGCCATATTGCTCTTCTTCTATAATAGGGTGTTGAATTCCCTGCCCCTGAGGCCTGCTGCCGCTCAAGGAACCTTTTTCCAATATTGCGGAGGTGATAAATATTCAATGACGGAGAGACTTGTGGGCAACAATTGGATCCGTTTCCTTCTGTGTGTTTGAAGGAGGAGGTGGTGGAGTGACATAATGCAGTGATCCTGTGTGAAAGCTGAAGTCGAGACTTTTATCAGCGGCCCCTGGGAACCTCGCTCTGATCTCCAAACCCAGAGACAGTGACCAAATCTCCAGATGTCAGTAACCAAACCCCCAGCACTCTATGTGTCTCCTTTTCACAGGTGACAGGAATCTGAATCAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027340 lncRNA downstream 174475 24497624 ~ 24561884 (-) False XLOC_013437
TCONS_00027339 lncRNA downstream 178934 24497624 ~ 24557425 (-) False XLOC_013437
TCONS_00027338 lncRNA downstream 178934 24497624 ~ 24557425 (-) False XLOC_013437
TCONS_00027337 lncRNA downstream 178934 24497624 ~ 24557425 (-) False XLOC_013437
TCONS_00027336 lncRNA downstream 178955 24497624 ~ 24557404 (-) False XLOC_013437
TCONS_00026537 lncRNA upstream 230828 24990268 ~ 24996634 (-) False XLOC_013441
TCONS_00026535 lncRNA upstream 230828 24990268 ~ 24996735 (-) False XLOC_013441
TCONS_00027342 lncRNA upstream 230828 24990268 ~ 24997070 (-) False XLOC_013441
TCONS_00027343 lncRNA upstream 421099 25180539 ~ 25189610 (-) False XLOC_013445
TCONS_00027344 lncRNA upstream 421099 25180539 ~ 25225387 (-) False XLOC_013445
TCONS_00026521 mRNA downstream 860989 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA downstream 861140 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA downstream 861430 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026514 mRNA downstream 1982722 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 1982722 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026532 mRNA upstream 174033 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 179252 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026534 mRNA upstream 221444 24980884 ~ 24988645 (-) True XLOC_013440
TCONS_00026538 mRNA upstream 236579 24996019 ~ 24996634 (-) True XLOC_013441
TCONS_00026539 mRNA upstream 268055 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026529 other downstream 175962 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026527 other downstream 259476 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026525 other downstream 260245 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other downstream 420060 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026523 other downstream 713346 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026536 other upstream 230828 24990268 ~ 24996647 (-) False XLOC_013441
TCONS_00026541 other upstream 399221 25158661 ~ 25158777 (-) True XLOC_013444
TCONS_00026548 other upstream 756453 25515893 ~ 25516631 (-) True XLOC_013448
TCONS_00026554 other upstream 995398 25754838 ~ 25758277 (-) False XLOC_013451
TCONS_00026560 other upstream 1095570 25855010 ~ 25905598 (-) True XLOC_013452