RNA id: XM_021586856.2


Basic Information

Item Value
RNA id XM_021586856.2
length 1097
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110506977
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 905576 ~ 908576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAAAGTTCGACACTCGATTATTTTAGCCTTTGCCGGGTAGCTAGCAAAATGCTAAATTGGCGAGCTGGCTAGCTAAATTCGCTAGTAGTAGTGATGCACATTAGCGATTCAATCTGTGtaaggttaaatacatttattcggagatagctagccagccaGTCAGCCAAGATCGCTCAGTTCAGCTGTAAAAAAAATGAGTCTTCTTCCAGACCTGAATGCCAATGAGGATGAAACATCCTACTATGCAGACAAGACCTGGGTCCAGTGCGAGTCTCCCAGATGTCTAAAGTGGAGACTGGTACCAAAGGGTGATGAAACGGTGGCTGAGCCGGACCATGGCAAGTCCTGGCACTGTCAAAATAACCCAGACCCTCTGTTCAGCCACTGCAGCATCCCTCAGGGCCCTTTCCCCAACAACTCCCAGTTCAAGGAACATGGCCTGAAGGTTGTGTACTCCGGGCTGCCTGTCGGGAGCCTGGTGCTGGTGAAAGCATGTAACTGGCCATGGTGGCCAGCCATTCTAAGTCCAGACCCCAACGTGGAGGAGTATGTGAGGCTGGACAGCGAGGGTTATGTGGAGCACTACCATGTTGAGTTCCTGGGGAAACCTCATACCAGATTCTGGGCTGCTGCCAAGCATGTAGAACTCTACCACAACTCCTCCACTAAACCCAGATACAGGAACCTGCGAGGCGCTATGAGGAAGTCGTATGAGGTGGCGATGGAGGAGGTGGCTAAGGTCAGGGAGATGGGCTGTGAGGAGAGACTGCAGATCAGCCACTTCCAGCCACAGGATTtgttgagTCAGGCTCAGAGGTTAATGCATGCTATTGAGAGGATGCTCAGACAATACTCCAACCAGCAGGACAACCAGGGCAAGCGGGACCAGAGGATTCGGATGTGGGATGCCGGCATCGAGGAGGACGGAGACACTCTGATCATAGAAGGGTTCAGGTTTGACAGCGCCACCTGTCTGGAGGACCTGATGACTGCAGGAAACAAGAAAtaaagattttttattttttaacaagaTATTTCCAgatagttttttttcttcaagAGATGTTAATCCTTTCCCCTTAAAAGTGCTTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116999 lncRNA upstream 8178 886962 ~ 897406 (+) False G104179
TU117000 lncRNA upstream 8178 897051 ~ 897406 (+) True G104179
TU116998 lncRNA upstream 8824 886962 ~ 896760 (+) False G104179
TU116997 lncRNA upstream 8824 894438 ~ 896760 (+) False G104179
TU116941 lncRNA upstream 26920 878059 ~ 878664 (+) True G104138
TU117002 lncRNA downstream 598 909058 ~ 911619 (+) True G104181
TU117004 lncRNA downstream 3333 911793 ~ 912016 (+) True G104183
TU117005 lncRNA downstream 4133 912593 ~ 912844 (+) True G104184
TU117006 lncRNA downstream 5723 914183 ~ 914388 (+) True G104185
TU117007 lncRNA downstream 6278 914738 ~ 915183 (+) True G104186
XR_005034563.1 mRNA upstream 33070 860459 ~ 872514 (+) False cmc1
XM_036934922.1 mRNA upstream 33607 860801 ~ 871977 (+) False cmc1
XM_036934910.1 mRNA upstream 33608 860459 ~ 871976 (+) False cmc1
XM_036934927.1 mRNA upstream 33615 860459 ~ 871969 (+) False cmc1
XM_036934929.1 mRNA upstream 33615 860880 ~ 871969 (+) False cmc1
XM_036934572.1 mRNA downstream 60156 968616 ~ 969528 (+) True LOC118936923
XM_036934979.1 mRNA downstream 115001 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA downstream 313670 1222130 ~ 1224904 (+) True LOC110515032
XM_036934986.1 mRNA downstream 400742 1309202 ~ 1390936 (+) False tgfbr2b
XR_005034581.1 mRNA downstream 515856 1424316 ~ 1426277 (+) False LOC118937323
TU116937 other upstream 33069 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 33069 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 33069 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 204313 690046 ~ 701271 (+) True G104092
TU116509 other upstream 724562 174996 ~ 181022 (+) True G103851
TU117843 other downstream 244601 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 400818 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 790613 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 800509 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1612256 2520716 ~ 2527972 (+) True G106019

Expression Profile