RNA id: XM_036935438.1


Basic Information

Item Value
RNA id XM_036935438.1
length 1775
RNA type mRNA
GC content 0.44
exon number 4
gene id mal2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4065992 ~ 4085680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGATAAGTGACAGGACTCTTGCTCTATTAAATTCAGAGGCTTGCAGGTGTAGGCTATGGCCacgccccaaatggcacctttaaacgtagtgcactatgtagggcgtGAGGTGCTATTTGGTGACGTTTCTCTGTGGGTCATGGTTATTGAGTAAACAACTTAAGTTGTGCAATTATTGACCTAAACCGTGAAGCTGTTTCAGCTTGCAGATAAATCACAGCTCTGCTTTCCGTTTCTCAGACTCCTCTCACCTTGGAATTTTCTCCCCCTGCAGGTAGACTAATATTGACTTTAGAGTGGCCTATCAACATCTGTGGAAGTTAATCGGCATCACTGCATCCAGTCTGCCTGTTTGTATCGTATTTTGTTCTCGAAAAAGATTCTATAGTAGAGCCAATCTTTCATTTTCTCAGGCACGTTCAATTCGTAGCAGATTCATCTTTAGCGAGTCGCGACGGAGAGATCGGGGTGAGAGGTATTGCGGTAACTGCGACTGCCTCCACTCTGCGGGCGAGTAGAGGTGGATAAAGTGAAAGGAGGAGCCGTGCACCTGTTAGACCAGTTAGGGACACATGACTGCAGAAGAATTTGCCTGAGTTGGTGTCCTTTGTCGAGATACAAGACGGGAAGGATGTCGGAGCCAGCGACGAATCCTGCGGTGACAGCATTCCCAGCGCCGACGATATCTTTGCCATTGGGACTACAAATATTGAGGACGTACTCCGGTGCTCTGATCTGCTTGGAAATTATATTTGGAGGGCTAGTATGGATCCTGGTGGCCTCCTCCAACGTGCCCGTGCCCCTGCTACAGGGCTGGGTGATGTTTGTCTCTGTCAGCACGTTCTTCTGTTCCAGCGtgtacctcctcctcttcctcctgggaTTGGCTGACAGGATCAACACCGACTGGAACCTGATGGATGTGCTGTACCACTTCACAGCACTGCTGTTCTACTTCAGTGCCTTGGTGCTGGAGGCTGCTGTTACGGCTGCCAGAGGGGTCATCAGGAGTACCAACAGCTCCATACCAGGATGTGTAATGGCCCCTAGTGGAAATATACTCACCTTCCTGGACAACAGACAATACAGTATTAACGTGGCAGCTACGATATTTGCCTTCGTGGTGACACTCTGCTACGCCTGCAGCATGTTCATGGGCTTCAGGAGGTGGCAGATGTGACACGGAAGAAAGAAAACGCACCATTTACGTTTTTACAGTTCAAACTCCTACCGTGCCGTCAAGACATTGTCACGTTGTCTGTTTATTACATGTGtataacattattatttttttaaagagaaCGAATGTATCGTGATATTTGCATCAAGTTTATATTTGTTGCAATGAGATCAAGACAGAACACTTTGTTGTATCTGTCATGTAATAACAGCACACCAGGCGTTATGGCGAAGCTACCAGATGTTGTAGTTCACATGTTAGTGCTTGGTTTCTGAGGCCCGACATGTTTAGTTGTGTGATCAATAGTGTAGATTTTATTTATTAGTATTTGATTCCCTGTAAATTGAATTAAACTCTGGATCAGAAGAGACCTATAACTGATTAAATAACAATAATGTTAGTTATATTTTCCCCTTGTAGAATGTCTAACTTTTTTAGAGCAACATGGAAAACTATGTGAAACATACCACATAGGACAATTATCATCATAATCACTTAATGACATTGTGTGAATATCTACTGGAATATATTGAGTATATTCTGTGATTTCTGAAATgcatttttacaaataaataactTTTCTTATCTTGTCGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120891 lncRNA upstream 11340 4054266 ~ 4054652 (+) True G106793
TU120888 lncRNA upstream 18368 4046707 ~ 4047624 (+) True G106790
TU120869 lncRNA upstream 40140 4025592 ~ 4025852 (+) True G106773
TU120858 lncRNA upstream 53453 4012139 ~ 4012539 (+) True G106764
TU120854 lncRNA upstream 57569 4007937 ~ 4008423 (+) True G106761
TU120895 lncRNA downstream 10016 4095696 ~ 4096869 (+) True G106797
TU120930 lncRNA downstream 52133 4137813 ~ 4138496 (+) False G106814
TU120939 lncRNA downstream 52133 4137813 ~ 4138496 (+) False G106814
TU120968 lncRNA downstream 82040 4167720 ~ 4168317 (+) True G106831
TU120915 lncRNA downstream 101138 4186818 ~ 4189033 (+) True G106806
XM_036935433.1 mRNA upstream 385 4050783 ~ 4065607 (+) True colec10
XM_036935245.1 mRNA upstream 643893 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 643893 3407190 ~ 3422099 (+) False mboat1
XR_005034605.1 mRNA upstream 1085799 2978813 ~ 2980193 (+) False LOC118937337
XM_036935442.1 mRNA downstream 27442 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 151200 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 151204 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA downstream 151371 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA downstream 151375 4237055 ~ 4302536 (+) False deptor
TU120871 other upstream 38398 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 265640 3639434 ~ 3800352 (+) True G106575
TU120618 other upstream 388142 3676265 ~ 3677850 (+) False G106595
TU120313 other upstream 578863 3367205 ~ 3487129 (+) False mboat1
TU120937 other downstream 52133 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 52133 4137813 ~ 4138496 (+) True G106814
TU122634 other downstream 658488 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 723059 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 772231 4857911 ~ 4858274 (+) True G108048

Expression Profile