RNA id: XM_036935442.1


Basic Information

Item Value
RNA id XM_036935442.1
length 3269
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110507036
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4113122 ~ 4119742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caCGCGTCACTGTGTCGTTAGACAGGACCGTTATAAATGGCTCTGCACACACTTCTGAAGCACGCCAAAGGGATTTACAGAGCTTCAGCAAGATACAAAGGAGGGAAAATTCTACAAAGAGAAAACTACCTTTCACTGAATCAGGATGTCTAAGCTTGCAGAGAGAACCCTTTTCGTTTTCTATATTTCAACACAgATTTGCTCCCAGATCTTGGCGCAGGTGTGTCAGACAAGGTGCCTCTGTCCGCAGGAGCCTCCGCTGTGCGCCCCCGGGGTCCAGTTGATTCTGGATGACTGCGCATGCTGTCTGGTCTGTGCGAGGCAGAAAGGAGAGGCGTGCTCGGAAATAAGTCCCTGTGATACACACAGGGGTCTGAACTGCGACTACACGGCCGATGTACACCAGAGGACAGGTGTCTGTGTCGCACATGAGGGAGACATCTGCCTGTTGGACGGTTCAGTGTACCAGAACGGAGAGACCTTCTTCCCCAGCTGCAAGTATCAGTGCACCTGCAGGGACGGTCAGATCGCCTGCGTGCCCCGCTGCAACCTGGACGTGATGCTGCCGGGCCCAGACTGCCCTCTACCCAGGAAGGTGGCGGTCCCAGGGGAGTGCTGTGAGAAGTGGGTATGTGAGCCCCAACCAGAGGCCAGTGCCTTGGGCAGCTTCGCCATGGCTGCCtacagacaggaggagacagtggGGTTTGACTCGTGGGACCCCAGTACTAACTGCATAGAGCAGACTACGGAGTGGGGCGCCTGCTCTCGGACCTGTGGCATGAGCATCTCCACCCGGGTCACCAACAAGAACCCCCGCTGTGAGATGGTCAAGCAGACGCGTCTGTGCATCGTCAGGCCCTGCGACAAACAGCAGCAGGATGCTCCTAAGAGAGGAAGCAAGTGCCTGAGGATGAGGAAGGCGGTGAAACCCGTCCGGTTCAGCTATAAGAACTGCACCAGCGTGCTGACCTACAAGCCCCGGTACTGTGGTGTGTGTACGGACGGGCGTtgctgcaccccccacagcaccGAGACAGCGCAGGTAGAGTTCCAATGTGCTCAGGGTAAAGCCATCAAGAAACCCGTGATGTTCATCAACACCTGCGCCTGTCACTACCACTGTCCCAGAGACAACGTCGTGTATCGACCATCAGACCTGGTCTACAGCGGTTACAGGTTATAACGCTGTTACCACAGACACAACGACAGTTTCTCCTGTTCCTCCGTGACAgtagtattgtactgtactgtagtcggGTGACTCTATATGTTCGTAACTCTAAATGTTCTTGACAACATCTCCCTGAAGGTGTATGGTTGGTCTCAggagggagaatctcaattgcatacttaTCGCgttcctctctcctcgcctccttctcaaaacccattggatgagaaagccagatgtccctcccctctgacattctcctccaatgggttttgagaaggaggcgaggagagagggtGCGAGGAGAGAGGgtacgaggagagagagagtgaggaaagaGGGCATTAGGAGAGAGGAcacgaggagtatgcaattgagattctcatAGTCAGCACTTAGCTACCTTTACAGAATAGATGAGCATGCTTTCTGAATCTGATATAACTGGAAACGTTAAAGACAGAGTTTTCCTTTTCTGCAAATGGCCTCAGTGATCATTCACAGCTCCTGGGTCAGTTTTAAACAGCCTCTGACTCAAAGGGCCTCAGTGATCATACACAGCTCCTGGGTCAGTTTTAAACAGCCTCTGACTCAAAGGGCCTCAGTGATCATACACAGCTCCTGGGTCAGTTTTAAACAGCCTCTGACTCAAAGGGCCTCAGTGATCATACACAGCTCCTGGGTCAGTTTTAAACAGCCTCTGACTCAAATGGCCTCAGTGATCATACACAGCTCCTGGGTCAGTTTTAAACAGCCTCTGACTCAAAGGGCCTCAGTGATCATACACAGCTCCTGGGTCAGTTTTAAACAGCCTCTGACTCAAGCGGCCTCAGGAGATCATACACAGCTCCTGGGTCCGTTTTAGACATTCTCTGACTGTTCCAGAGGCATTTCCGAAATAGCGGTTAGACCACCTATAATCTTTTCAAGTGTAATGTCTGCACGTCCAACAACTCTCCAGCTGCACGTCCAACAACTCTCCAGCTGCACATCACAAAGAAAATGTCTGGTGAAAGCAACACCTGCTCACTGTTGTATTTGTTCTGGTGAAAACCTGTGtttctatccccccccccccccctcattcctctgacctttgaccttgtAGATGTTTGCAGACTCTTGCCCTCTCCCAGGCTCTCCAGTCAACCCGGTCTTGGCCCACACAACAGTCATGTCGACAGCCAGGTCAAAAAGGTTGTTCTTCATAATGTACTGCCGCTTTCAACAGCCTGTAAGTCTCCGCTCTTGGACCTCTAAGCCCCGCCCCACTAAGCCCCGCCCCACTTACACgtcagacctgggtcaaatacatGTGTCAAAACTCTCGAGATGATTTAACTTGACCAGTGTGCAGGCTGTGGGTGGAGTTGGCAGTTTATGAGACTATTCCATTGGTTGCATTGTACAGGGCAAGCTAAGTCAAGTTAAGTCAAGCTAAGTCAAGCTAAGTCAAGCTAAGTCAAGCTAAGTCAAGTTAAGTCAAGCTAAGTCAAGCTAAGTCAAGTTAAGTCAAGCTAAGTCAAGCTAAGTCAAGTTAAGTCAAGCTAAGTCAAGCCAAACCAAGCTAAGTCAAGCTAAGTCAAGCTAAGTCAAGCTAAGTCAAGTTAAGTCAAGCTAAGTCAAGTTAAGTCAAGTGCACCTCCAAAGTCtttggcatatatatatatatatgtcacccAGTTCTGATATATACTGTCATTGACTGCGACGCAATGTAGATTTTCCTTAAAAACAGAACGTTAATTTTCTACTCCTCCTATGGTCTCTTGTAGAAAGATACACGTTATGTGAATACTTTACTGTATAGTTGGCGCCAGCGTGTATTAAATACACAGTGTCTGTATGTCTTTGTAAACCAGAATGTAAATATGAATTCTATatagtgtctgtatgtgtttgtaaACCGAATGTAAACCGAATGTATATATGAGTTCTATATAGTGTCTGTACGTCTTTGTAAACAGAATGTAAATATGAATTCTATATAGTGTCTGTACGTCTACTCTGGTTGTGTTTCGCTCAGCCTTTTCGGTCGATATAATAATACTGTACTTACTCATGATTTGACATTAAATATGTATATTTTCTATAA

Function

GO: NA

KEGG:

id description
K23571 NOV, CCN3, IGFBP9; insulin-like growth factor-binding protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120895 lncRNA upstream 16253 4095696 ~ 4096869 (+) True G106797
TU120893 lncRNA upstream 29630 4077278 ~ 4083492 (+) True G106795
TU120891 lncRNA upstream 58470 4054266 ~ 4054652 (+) True G106793
TU120888 lncRNA upstream 65498 4046707 ~ 4047624 (+) True G106790
TU120869 lncRNA upstream 87270 4025592 ~ 4025852 (+) True G106773
TU120930 lncRNA downstream 18071 4137813 ~ 4138496 (+) False G106814
TU120939 lncRNA downstream 18071 4137813 ~ 4138496 (+) False G106814
TU120968 lncRNA downstream 47978 4167720 ~ 4168317 (+) True G106831
TU120915 lncRNA downstream 67076 4186818 ~ 4189033 (+) True G106806
TU120978 lncRNA downstream 85698 4205440 ~ 4206012 (+) True G106841
XM_036935438.1 mRNA upstream 27442 4065992 ~ 4085680 (+) True mal2
XM_036935433.1 mRNA upstream 47515 4050783 ~ 4065607 (+) True colec10
XM_036935245.1 mRNA upstream 691023 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 691023 3407190 ~ 3422099 (+) False mboat1
XR_005034606.1 mRNA upstream 1132929 2978829 ~ 2980193 (+) False LOC118937337
XM_036935488.1 mRNA downstream 117138 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 117142 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA downstream 117309 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA downstream 117313 4237055 ~ 4302536 (+) False deptor
XM_036935521.1 mRNA downstream 208241 4327983 ~ 4538057 (+) False col14a1a
TU120871 other upstream 85528 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 312770 3639434 ~ 3800352 (+) True G106575
TU120618 other upstream 435272 3676265 ~ 3677850 (+) False G106595
TU120313 other upstream 625993 3367205 ~ 3487129 (+) False mboat1
TU120937 other downstream 18071 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 18071 4137813 ~ 4138496 (+) True G106814
TU122634 other downstream 624426 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 688997 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 738169 4857911 ~ 4858274 (+) True G108048

Expression Profile