RNA id: XM_036935531.1


Basic Information

Item Value
RNA id XM_036935531.1
length 3599
RNA type mRNA
GC content 0.50
exon number 22
gene id LOC110520696
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4602958 ~ 4654733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagagagagagagagagagagagagagcgcgcggaAATGAATTTGATAATACGAAAAAAAGTCTACACAACTTTTTATTTACATTTATACTGAACACTGATGGTAGAGTATTCAGAGGAATGGATCGGTACGTGCTAGTTGTTTCTTTTAACCAAGAAGAGGATAAATGCGCGAAGGCATTGGAGGCTGCCAAACAGATCTATGATCAACTGGGGAGCATCGCCAGTTGTAATTCAAAACGGAGGGTTTCTCTGTTTCCAGCCTGCTCTCTGAGTGGTGGTCCAGCCTCACAGAGGTGGTATTTTGCTGTCCAGACATGCCATGGGACATCTCAGTTCTGCAGTACAGAGTGGGAGGAGCTGGGTAGTTGTCAGAAGAACGATGAGCAGGAGGAGAGCCCCAGCACtatagaggcctgtctcagtgctCTGGATGAGCAGGAGGAGAAGACTGACCAGCCTGACCCACAGCAGACACAGTTGTATGAAGAGGCAGCAGAGGGATTACACCTGTTATCAGACAAGCTTCCCCCTCCAGGAAAAGCACTGTTAGATGTGATATTTCTGGGTTTTGCTGAAGAAGCTCCTAAGCTGAAGGACTTCCTCCCTGTGATTGGCTCGTTGAAACACATGCAGACAtggcacacagccaagatgacCATAGTGACTGAACACCAAGCTGGGTGGCAGAAGCCAGCCTCTAACCTGTCAGCCAGAGTAGTACATCCCAGTAGCATCATGACCTGTATTGATGAGAGGGAGTTATGGAGAGGAGGTGTTCTCATCAGAGAGAAAAAGTTTGCCTCTGAGGTGAGGTTTGAAGGCTTCTCCCTCCGAGCCCAGGATAGAGAGACATGGTACAGCCTGCTGCCTTCTGATCCAGGATCCCATAACAACTCTGACCACAAGCTACACTCAGAGACCAACTCTGACCACAATCTACAGTCGGAGgTGTTCCATTACTTCCGGTCTGTTCTAGACCTGGTTCAGTTGGTGACGGTGTCAGATATTCCCAGCTTCCTCCGCTCCAGCACAGAGTTTCACCTGTATCCTTCACATCAGCTGATGACTGAGGTAGGGGCACTGTTCTCTCTATCCTGTACGGTCAGCTCCATGGCTCTACCCCCTGCCTCTCAGCTCAGCTCCCAGAAGTGGAAGGACTTCATGTCTAAGAGACCCAAGACCCTGCCTGTTCCATATGTGGAGGTGAAGGGTGAGAGCGGACACTACTTCCTGTTGGTCCAGGGGTCAGAGGGCGGAGGCTGCAAGGCCCGCCTGATACACTCAGCCAATCAGATCAATGGAGCCGCTGCCATGGCAACCGTCAATGGGCTTCTGAAAGAGAATTCTGTGTCGTCTTCAGGTTCCACCACTACAGACTGGCTGcgctccctgccctgtctccatGGAGACCAGCTgctacagagggagaggaagttggCCGAGGTGCAGACTCTGGTCCTAAAGGAGTGCCTGAGACGTAGAGAAGAGGCAGAGAAGCCAGCTTCAATACCAGTCAATGACCTGAAGATCTTGCTCAGCCTGGCCAGAGAACAGTACCTCAAGATGCATGACTCTACCCTGCCTAAAGCCTCTACCCTGCTTAAAGACTCCAGTCTGCCCCGAGTTGAGCCCTGTGGAGCAGAGGAGGTGAACCTCACTACGAAGACTACAGAGTTCATTAAACACTCCCAACATGCTGATTGGCCAGAGAGAAGTGTTCTGCACAACTATGAGAACCTCCAGAGGACTCGTCAGAAGCTGAGGTTTGGTCTGCTGTCTGGCAGCTCATCTGACTGTCTGCTGGGGCCTAAAGACGTCCAGGGCCAGAGAACCACCTCAGCCTTGCTGGATGCCAAAGAGCTGCTTAGACACTTCACACCAGACGGCCTGCCCACCGGAGAACTGCAGCCTCTATTAGTCCAGAGACTAGGgGGAAATACATTCCAGATGTCTCCAGACTTGACCCCCAGGAAAGTGACCCAGATCCCCTTCAGCCAAGCAGCCAGCTCCCACTACCATGGACTAGAGTTCTGTCTGGACGAGCAGGGCCACAAGGCCTTGGACCGGGACCAGGGCTTCGTCCGGCTGCAGTCTCGTCTGATTCGCTACGAGACCCAGACCACCTGCTCCAAGGAACCTTGTCCCGTCCCCTTCGCCTTAAGCCCCGCCCCCTCGCCGGCCGTGCTGTCTGAACCAGGAAGTGTCCCGGACGGAGAGGCCCTCCTCAACTCTGACCTGCCCAGGATCAAGAGACGATCCTGGGATACAGACGCCACCCACCCCCATAAGAGGCTGGCCAAGTCGGAGAGCAGTGATTCCCTGGGCTCTGTGTGCAGTGGCAGCAGTGGAACTGATACCCACCCAGCTGTGAGAGGCTTGAGACCGCAGAAAACCAGGTctcagtcctcctcctcctctgtctcagcCCTAAGAATGGGCCCCCGGGGGCCAGAGAAGCACCACCCTGACCCCCAAAACAGCCACAGAGCCCCCCAGGcccagggacacagacagggacaggcagaggaCAAGGCCAGCAAGGAGTCTCGCTCCCAGAAACATGCCCGGATGCTAGAAGAGGTTGTGGCGAAGACGCTGAAGCATCATGGGATCACCAGAGAACACAAGAATCTTGCCGCCTGCGGTCAAAGACTGTTTGAAATCTCCAAATTCTATCTGAAGGATCTGAAGACGTCCAGGGGCCTTCATGAGGAAATGATGAAAGCAGCCAGCAGCAATGCCAAGCAGGTCATCGACTGGGTCACGGAGCGGGCCTCTAAGTGACGAGAGAACGATCCCTAGTGGTTTTCGACTGGTTTTATCGTCACGGCAAACCGCAACCATCAGTGGAATGTACTTTCACCACAGGAAACATCAGTACAGTCTGTCAGGAGGTGAACGTGTGATTagcatgtttgtttgtgtcttaAGAACCTCAGTGACTGTCAGTTGCCAGGCAGCCATTCATTGTTAATCCATTGTTTGTTTATGTCTTAAGAACTTCAGTGACTGTCAGTTGCCAGGCAGCCATTCATTGTAATTacattgtttgtttgtgtcttaAGAACCTCAGTGACTGTCAGTTGCCAGGCAGCCATTCATTGTAATTacattgtttgtttgtgtcttaAGAACCTCAGTGACTGTCAGTTGCCAGGCAGCCATTCATTGTAATTACATTGTTTGTTTATGTCTTAAGAACTTCAGTGACTGTCAGTTGCCAGGCAGCCATTCATTGTAATTACATTGTTTGTTTATGTCTTAAGAACCTCAGTGACTGTCAGTTGCCAGGCAGCCATTCATTGTAATTACATTGTTTGTTTATGTCTTAAGAACTTCAGTGACTGTCAGTTGCCAGGCAGCCATTCATTGTAATTACATTGTTTGTTTTAAATGAGTTCTCTCTTATGTTGTTTTAATAGGAAATTCCACAAACTGGGAGGTTTGTCTTTTAGATGTGTTTACATGGTTTATTTAACATGTATGTCTCTGTTTGTTGTAAAGCATTGGTAGAATTGTAGATATCACTATTTCTTTTAGTTGTGCCATCAAtttgatgaaataaaataaaatgtgttttgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122264 lncRNA upstream 3446 4596186 ~ 4599513 (+) True G107697
TU122260 lncRNA upstream 21282 4581316 ~ 4581677 (+) True G107693
TU122246 lncRNA upstream 61681 4540537 ~ 4541278 (+) True G107682
TU122247 lncRNA upstream 62659 4539636 ~ 4540300 (+) False G107682
TU122243 lncRNA upstream 75885 4526567 ~ 4527074 (+) True G107680
TU122583 lncRNA downstream 7791 4662524 ~ 4668610 (+) False G107896
TU122584 lncRNA downstream 7791 4662524 ~ 4668610 (+) True G107896
TU122586 lncRNA downstream 51466 4706199 ~ 4707474 (+) True G107898
TU122607 lncRNA downstream 55356 4710089 ~ 4710939 (+) True G107911
TU122611 lncRNA downstream 56811 4711544 ~ 4722290 (+) True G107912
XM_036935508.1 mRNA upstream 30578 4327990 ~ 4572381 (+) False col14a1a
XM_036935511.1 mRNA upstream 30578 4327990 ~ 4572381 (+) True col14a1a
XM_036935515.1 mRNA upstream 31956 4327986 ~ 4571003 (+) False col14a1a
XM_036935520.1 mRNA upstream 33307 4327987 ~ 4569652 (+) False col14a1a
XM_036935521.1 mRNA upstream 64902 4327983 ~ 4538057 (+) False col14a1a
XR_005034649.1 mRNA downstream 80924 4735657 ~ 4737279 (+) False LOC118937361
XR_005034652.1 mRNA downstream 80924 4735657 ~ 4737279 (+) False LOC118937361
XR_005034651.1 mRNA downstream 80924 4735657 ~ 4737280 (+) False LOC118937361
XR_005034655.1 mRNA downstream 80924 4735657 ~ 4737281 (+) False LOC118937361
XR_005034653.1 mRNA downstream 80924 4735657 ~ 4737282 (+) False LOC118937361
TU120937 other upstream 464463 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 464463 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 575365 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 802607 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 89435 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 154006 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 203178 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 481623 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 641446 5296179 ~ 5299933 (+) True G108354

Expression Profile