RNA id: XM_036961549.1


Basic Information

Item Value
RNA id XM_036961549.1
length 7738
RNA type mRNA
GC content 0.57
exon number 51
gene id tg
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5348252 ~ 5447200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGACTTGTGGATGAAAAGTACCAGTGTAACACAGTGAAGATGATGAGCCTGGTTCAGATCTCCTCCATACTGCTGtgttacctctgtctgtctgaggggaaGATTTCAGAATATCAACTGGAGTCTGAGACCCTGAGTCAGTGTGAGTCTCTACGTGGTGGTAGTTCTGCCCGGCAACAAGACCATGTCCCCCAGTGCTCAGAGGACGGGCGATTCAGACACGTCCAGTGCAGCCGTGCTGGTGGTGAGTGCTGGTGTGTGAACGCAGAGGGAGCTGAGATCTCTGGATCCAGACAGAACGGATCAGCTGTGTACTgTCTGACGTCCTGCCAGCTCCACAGACAGCAGGCCCTGCTGAGTGGCGATGCCCCCCTGGTGCCCCAGTGCCAGGCCTCTGGGGAGTACCAGGCGGTGCAGTGTGACAGCGCCCGGGGACAGTGCTGGTGTGTAGACCTGGAAGGCATGGAGCTCTACGGGACCCGGCAGAACGGAAAGCCCTCTCAGTGCCCAGGCAGCTGTGAGGTGAGGTCGAGGCGTCTCCTCCACGGCGTCGGGGAGCGCTCCCCCCCTCAGTGCTCGGCCGACGGCTCCTTCCTGTCCGTGCAGTGCAAGTTTGTCAACACCACTGACAGGATGGTCTTGGACCTGCTGCACACGTTCAACAGGTTCCCTAAAGTATTCCAGACGTTCAGCAGCTTCAGACAGATGTTCCCAGAGGTGTCCAGTTACTGTTTCTGTGCTGACAGCAGAGGCAGGGAGCTCCCCAGCACAGGTGTGGAGCTGCTGCTAGATGAGGTGTACGACACAGCCTTCTCAGGTCTGGAACCAGGCCGCTCCTTCTCCCAGACCAACATGTACCGTATCCTACAGAGGAGGTTCCTGGCCGTCCAGCTGGCGATGAGTGGCAGGTTCAGATGCCCCAGCCCTTGTGAGAGCGAGCGATCCGCTGGTGCCCAAGCTGGCAATGTGTTTGTGGCGTCCTGTGCTTCCGACGGGGGTTACGTGCCAACCCAGTGCCAGGCGGGTGGACAGTGCTGGTGTGTCGACCCCACAGGGAAGGAGATCTTTGGGACACGACAACATGGAGGACACCCTGACTGTGGTGCTGGAGTGAAGGACTGCACCTCTGAGCGTCGCCAGGCCCTCTCCAGGCTCTTCTCCAGCCCCTCAGATCAGGTGCCATCAGCCAAGGACTCACAGACACACCCAGTCCCAAGCCCCCTGTCTCCATGCAGCCCCCAACTCCAACAGCTCCTGTTGGGGACTCTTGGAGAGTCTCTTTCCGAGCGATCCGATTTAGGAGACATCCTGGCTGAGACGATCCAGGGGATGTTCCCTAGCGGGGCCATGGCCCTCAAGGCCCTATCTCTAGCCTCCAACCCCAAGAGACTCCAGGAGAACCTGTTCGGAGGAAAGTTCTTAGGAAACGCTGGGATGTTTAACTTCACTGGGGCCGTCGGTGTCAGCGGCACGTTGAGTTTCAGTCAAGCCAGTCTGGCAAACAACCAAGATCTGGTTCAACTCATCAGCGCCACCCTGGAAAACGGAGACTTCCTCTCCACCCTACGCCAAACCATCCTCTTATCCAAAGCCGAGGACAGCACCCAGCTAGGtgagctgttcagggtcctgtttgaGAGCGCCCAGTCCGGTGGTGCTGGATGTGAGAGGGAGCCTTCTGCCCTGTACGTGCCCAGCTGTGATGACAGCGGCCAGTATCAGGAGATCCAGTGCCAAGGCTCGGAGTGTTGGTGTGCTGACCCCCAGGGTCAGGAGGTCACGGGGTCACGTTTCAATGGTCAAAGGCCAAGGTGTCCGTCACGATGCGAGAGGGAGCGAGCGGCTGCTCAGAAGGTGAAGTCAGGCCAGGCTGCTGGGGTAGAGGTGTTCATGCCGAAGTGTGCGGAGGACGGGAGCTACGTGGCGTTGCAGTGTCTGGGAAAGAGTTGCTTCTGTCTGGACCTCCTGGGAGAGAGACACGCCACTGTCCCCGTAGGACAGACTGTTCAGTgtcctccccctccctctccccttccctccccagGGTCAGCTCCAGGCTCCTGTTCCCTGGCGGTGGCTGAGGTGGACCAATTCCAGGAGGAGGCTGAGCGTCTGGTCCTCCTCTCCAACAGCTCCCACATCCCTCTGGGCTACAGCTACCTGCTGGCTGAAGGTCTCCGTCTGACCTCTGACGAGCTACTCCacgccctctcctcctcctccgaccAGACCACGCTGCTCTCTGATAGGCTGCTGAGCCACTCACACTCTACTCTACGACTTGCTGCCCACTCCACTCTGCGGTTCTATTGGCAGAGCCAGCAGGCAGCATCTGTGGAGGAGAGACAGTCTCTACTGCTGGGCTACCAGCCCTACAGGCCCCAGTGTGATGCCCACAGACAGTGGCTGCCCACCCAGTGCCACCCCAGCACAGGTCAGTGTTGGTGTGTGGATGAGGAAGGAGGATACATCCCAGCTTCCCTGACCAGTCGCTCCCTCCAGAGACCACAGTGCCAGACCCGGTGTCAGAGAGGTTATGCTCAGGCTCTGCTCTCTGATTGGACACAGTCCTCCTACGACCCAACTTGTGAAGTGaGTGGCCAGTTCTCTGTGCTCCAGAAGGGGTCTTCAGGTGGAGGTGTAGCCTGGTGTGTCAGTCCTGTTTCTGGGGAAACCATCCAGCCTGCTACCCTGAGTCCCAGTGGAGACCTCACATGTCCTAGCTGGTGTCAGTTGTTGACAGACAGAGGTCAGTCTGTGGTGGGTTATGAGCCGGAGTGTCAGGTGGATGGAAGGCTGTTCTCCCCGCTGCAGTGTGACCAGACAGACTGCTGGTGTGTGTCTCAGACAGATGGACAGGAGCTGCCTGGAACCAGGACGCCACGCGCCACCGGGAAGACCCCAGCCTGTGACAgtccCCAGTGTCCCTCACCGTTCTCTGACATCACCGTTACCTACGGTGATGTGGTCTGTCGCTCTGACGTGATTGGTGGCCAGCAGAACTGTGACCTCATCTGTCACCTGGGTTACGAAAGCACACTTCCTGTAAACATGCAGTTACTGTGTGACGTGGAGACCAGAGCCTGGGTGACAGAGGCCCCACTTCCTCAAGCCTGCCAGAgACTTCAGGTGCTGCAGACCGTCCAGACCTCTGTGGTGCTCCAGCTCACCCTGCCTCCAGGCCAGGGACCCTGCagctcctccctccactccagcCTGCAGACCTCTCTACTCCACGACATGAGGGCCCAGGGTCTCTGCAGCCtgcagCTgacgtctgtctctgtgtccgtGTGTGATGAGTCGTCCGTCTCTgtagagtgtgtgagtgaggaaAGCGTCAGTGTTCAGGTCAGCTGGAGGGCTCTTCTCTCAGACCTTCCTATCTCTGTTCTGCCTGATCTGCATGACGTCGATGTAGCGCTCAGTGAGGACAGGCTGTTGGATGGGGTGCTAGGCCTGATGGGTAGTGACCCCTACCGCTCCATCTTGACCTCTGAACCCAGAGTCCTCTCTACCTCAGCACCCAACTTTGGCTGTTCCCATGGCTACCAGCGTGTTGGAACAGGATGTGTGGTGTGTCCTGCGGGTATGTTTTCCAGTGGAGGTGTGTGTTCTCCCTGTCCTCAGGGCTCCTACCAAGACCAGGAGGGGTCAGACTTCTGTACCATGTGTCCTAAAGGCACGTCCACTAACGGAGCTTCCACTGCCACACACTGTTTGACAGAGTGCCAGCGCAGTGGCCTGAGGTGTTCAGAGGGAGGGGACGTCCTGTCGGCCCAGCAGGACATCCAGACCAGGAGGTGGCGCTGTGTCACATCCAGCGGAGAACAGCTGGAGTGGACAACCACTGGCCAGCCTCTGTCTGAGGGAGAATGTTCAGTTCTGGAGAGATTTGAGACAGTTCCCAGATCAGCGTTTTCTCTAGCAGCAGAAGACTATGTCGTCCTCAGCTCAGAGGCGTCAGACACGACCACGGAGAAACAACTCAGGACGTGTGTCTCAGCTTGTGCCCAGGTCCAGACTTGTCTTTACGTCGTCCTTTACGCTGAAGAAGGACAAAGTCACTGTGAACTCTACAGCACCGACGCTGCTAACATCCGATGCCAAACCTCTGAGCTAACCAAAGGGTTCCTGGGAAATGCCGGTGCTGATATGTTCCAGAACCTGAGCTGTTCTCTGAAGGTGAACGGGGCTGACAGACAGAACGTCACGGTCATCAGGAAGAAAGgTCATGAATTCACCACTAAGGCCCAGAAGACCTTTGAAAGGTTGAGTTTCCGTAAGGCCAGTTCCGGTGTGTATCGTACCATGGTGTTTGCAGCTGAAGGAACCACTCTGACCGACGTCCATCGTTTCTGTCAGGACGAGTGTACCCAGAACACCTGCTGTGACGGCTTCATCCTCAACCAGAACGTTCTCAGCGGAGgTACCATTATGTGTGGTCTGCTGAGCTACCCAGACATGTTGCTATGCAGTGAGGCAGACTGGGACGTGTCTGGCCTGGCCAAGGCGAACAGGATCTGTGGGGCTGGAGTCACCTACAATAAACTGCAGAAACAGTTCATCTTTAACTTTGGAGGACAAGACTTCACCATCACTGATACAGCTCTGCCAACATCAAGCAAGAACAAAACTGACTACCAGGCCACCATTATTGGGTTCCAAGGCATTTACCTCTGGAAAGAGTCTGATATGACCACTCGTCCCAAGACCTCCCCAGCCTGTAGCAGTGTCCTCCCACAACAAGCCCCCCGAGTCGTTCTGTCGGATGCAGTGAAGGAGACGTTTGTGGCCCTGGACAGTAGTGCTGTTGTTGTGGACTCTGAACGGGACATCCCCAGCCTGCAATACTGGATCTTTAAACATCAGTTCTCTGCACAGGAGGCTCAGCTGTGGTGTCTGAAACactgtgaggaggaggagctgtGCCACTTGGCTGATGTGAGAGATGAGAGCTCAGTGTACTTTACCTGCGCCCTGTACCCAGACACCCAGGTGTGTGGGGCCTACGACAAACCCCTGAGACAGGCCTGCAGCCCTGTGCTCCCCCAGCAACCCCACACCGCTCACACCAAGAAGGTTGATCTGACTGGAAGTGTGGAGAGTTTTTACAGCCGTGTTCCCTTTAAGAAGATGGTGTCTTATTCCGTCCGTAGCCGTGTCAACCTGAGTGCCAAGCCTATCACGGAGGGGTTCCGTGAGTGTGAACGGAGATGTGATGAAGACCCGTGTTGCCGTGGAATCGGATACGTCAGGGACACACAGTCACCTGGATCAGACGTTCTCTGCCTGACTCTGAACAGCTTTGGTATCCAGACGTGTGGTGAAGGAGAACGGACAACCTGGAGAGTCCAGGACTGCACCCCCTCCAGAGTAGAAACCGGAGTGTATCCGCTTGGCTGGTACgagaaaccagTGAACCAGTGGACTAAATCACCACGGTTGTGCCCCAGTTTCCAACTACGTGTTCCTTCAAAGAACGTGAGTTTGAGTGAGTGGAGACTCCTGGATGTGTCCTCTACTCTGGTGGATCCGTCCGTCTCCACGTTTGACATTATTCACATCAGTAAAGACATCGCTGAGGACCTGGACAGGACCAGAGACTGGTGTCTGTCTGCCTGTGAGGAGGCTGAGTCCTGTGTTGTGGTGTCAGTGGGGCGGACCGACTCGGCTGTCCGCTGTGTCCTCTACCCAGACACCCTGGCCTGTGGcccctccactaccaccaccgGAGGTCAGGACTGTCGGCTGGTCATCAGAGAGTCAGCTCTCCAGGTCTACCTCCACAAAGAACCCAAGGCGGCGTTGACGTCAGTGTTTATCCCGGCTCACGGAACGCTCCAGGGATCGTCCGTGACAACGCTGCTCGAGTCAGACAGGAAGACAGTCAGACAGTTCTTGGGAGTTCCGTACGCTCGTCCTCCTATCAGAGCCCTCCGTTTCGTACCCCCCCAGCCTGCTGAATGGAGTGGCACATGGAACGCCACGGTTACCAGACCCAGTTGTCTGCAGCCTGGAGCTGTGGAGTCATCAGCCAGCAGTGAGGACTGTCTGTACCTCAACATCTTCATCCCCAGCGGCATCAGAGGGAGTGCAGCGGTCCTGGTGTTCTTCCATAACCCGTCTGGAGCAGCCGGCGATGACACAGCATCTCTACTGGACGGCTCCTACCTGGCTGCCGTCGGCAACATCGTCGTGGTTACCGTCAACACCAGGGTTGCAGCGTTCGGATTCCTCAGCACAGGGTCCACAGCCCTGCCAGGTAACGCCGGCTTCCAGGACCAGGTAGCCGCTCTGAAGTGGGTCCAGGAGAACATTGAGGCGTTCGGAGGTGACCCCAGGCTGGTGACGGTGGGGGCAGAGCGGAGTGGAGCCGACGTGGCCAGCCTACATCTGACCTCCCCCTCCTCGCGTGGTCTCTTCGACAGGATGCTGCTCATGggtgGCTCTGTGTTCTCCCCTGCCTCAGTGCTGAGTGTATCTAAAGCCCAGGGGCAGGCTGAGGCTCTGGCCAGGGAGCTGGGCTGTTCCTCCTCTGACCCAGAACAGCTGGGCTCCTGCCTGAGAGCAGCTCCAGCACAGGACCTCAACGCTGCCCAGACCAAGTTGCTGTCAGTCAGTGGGCCCCTGCAGGCTTGGGGTCCAGTGGTGGATGGGGTCTCTGTCCAGGGGAAACCCTCCATGGCCCTGATGAATGCAGGCTTCCACAGAGCTGACCTCCTGCTGGGCTCCTCCGCAGAGGATGGACTCATCAGCAGGGCCAAGAGGATCAAGAACTTTGAGGAGCTCCAGGGGCGAGCTGACAGTAAAACAGCATTCTACGAAGccctgtccaactctctgggTGGAGACGATGCCAATGCGTTTGTCAAGGCTGCAGCCACCTGGTTCTACTCCATGCAGCACTCTCCCTCTCCAGCTGGCTACAACCTCTTCTCTCAGGCTCTTAACAGTGCAACCAGagATCTCTTCATTGTGTGTCCCACCATAAAGATGGCCAACTTCTGGGCAGCTAACACCAGATCCAATGTGTTCATGTACTACCTGCCTGAGGACACCGCCCAGACCAGTGCTGACCTGTCAGTACCCCTGGATGTCCACTATGCCTTTGGCCTCCCCCACAGCCCCCTGACCTATGACCTGTTCACCAACACAGAGAGACGCCTCTCCCTACAGATGATGACCTACATGGCCAACTTCATCAAGTCcggAAATCCCAACCAGGCTCACAGTGTGTCCCGCGTGGCCTTCAGCGAGGCGGCGCTGCCCCTCTGGCATGCCTTCCAGTCTCACCCTGAGGGGGACAGCTATATGGAGGTGGAGCCAGGCCTCAGCAACCACAGGGGCCTCCGCAGGGCCCAGTGCTCCTTCTGGGCCGACTACGTCCCCTCTCTGACCGCCTCCATTGGCAAACTTTCATCTGCTGTGTCGGAAGGGGAATCTGCTGGTTTGGGGGCTGGAACTCCAACACCAGAAACCAAGTTATTTGTTGATTTCTTGACAACTGTCACCCAGAGCAAACCCAAGTCAGAGAAGGATGCTTATAATTAGAAAGAACATCCACACTACGTATCGTCTAATCTGCATTTAGGGTTTATCACTCACACATAGTGAGAAATGACATGTTGTTTCAACTGCCAAAGTAGTCGGTAAATTAAGTCGTGTCATTTAAGTGCCTGTTTAGTTTCCACAcaaatgaaataaaacaataaaacaattGCATTACATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123162 lncRNA upstream 13767 5333753 ~ 5334485 (+) True G108361
TU123089 lncRNA upstream 62523 5283628 ~ 5285729 (+) False LOC118937366
TU123088 lncRNA upstream 62523 5285007 ~ 5285729 (+) True LOC118937366
TU123125 lncRNA upstream 94220 5249713 ~ 5254032 (+) True G108333
TU123129 lncRNA upstream 106569 5240611 ~ 5241683 (+) True G108336
TU123424 lncRNA downstream 12306 5459506 ~ 5460437 (+) False G108567
TU123423 lncRNA downstream 12600 5459800 ~ 5460437 (+) True G108567
TU123461 lncRNA downstream 44791 5491991 ~ 5492744 (+) True G108598
TU123472 lncRNA downstream 61238 5508438 ~ 5509164 (+) True G108608
TU123480 lncRNA downstream 79504 5526704 ~ 5529066 (+) True G108613
XM_021595380.2 mRNA upstream 38217 5306276 ~ 5310035 (+) True ccdc127a
XR_005034673.1 mRNA upstream 62511 5283694 ~ 5285741 (+) False LOC118937366
XM_021587149.2 mRNA upstream 72668 5274156 ~ 5275584 (+) True mrpl32
XM_036935668.1 mRNA upstream 112358 5228057 ~ 5235894 (+) True LOC110520809
XM_036935658.1 mRNA upstream 121211 5195939 ~ 5227041 (+) True tbc1d31
XM_021598289.2 mRNA downstream 4299 5451499 ~ 5457130 (+) True ccn4b
XM_036935926.1 mRNA downstream 33775 5480975 ~ 5542867 (+) False ptp4a3b
XM_036935931.1 mRNA downstream 59340 5506540 ~ 5542867 (+) False ptp4a3b
XM_036935869.1 mRNA downstream 95794 5542994 ~ 5572618 (+) False dync1i1
XM_036935874.1 mRNA downstream 95794 5542994 ~ 5572618 (+) False dync1i1
TU123151 other upstream 48319 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 211260 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 489978 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 536677 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 602666 4744168 ~ 4745586 (+) True G107922
TU123438 other downstream 59346 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 134093 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 272765 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 272765 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 333014 5780214 ~ 5782644 (+) True G108702

Expression Profile