RNA id: TU123438


Basic Information

Item Value
RNA id TU123438
length 2912
RNA type TUCP
GC content 0.51
exon number 6
gene id ptp4a3b
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5480975 ~ 5542867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGGGTGTGTGCAGTGTGGATGGACGCTCAGTGTGTGCAGGGGAAGCTCTGCAGAGTAACAGGTTGGAGAGACTCCTTGGAGGACCTGGGGTTTGATGAGCTTGATCAACCTGGTGGTGACAGAGGAATGAAATGCTTCTTGGGCTTTAGCTGTGAGGGAGGAATCTAAAGAAGACTGCTTGTTGTTTCTCTTCTTGTCTAATTTGAGGATGTTTTCTTGTCAAAGAAGTTGTCTCAGCGCTGCACTCAGGCCGGCCAGTCGTTGATGGAGTTCTTGCAGGGGAGCGGTGACTACTGCCACGCCCAACATCTCAGCGCTTGAGCCCAGGCCCCCCGGGGGGAGGATGGCCCTGTTGCCCTGCTGCACCTCCCACCCCTGAATGCCCACAGCCAGGTCGCCCTCTCAACCCAGACCCAGCCACCCCCACTCTGACTGTAGACTGACCGACGGACGGCAGGCCCACTAACTCACCAGATGGGGTAGTGAGTGTCGGTGGCCAAGGGCAGCGTAAGCTAACGGACAGCTACCTCTTCACCCTGTCCAACCCCCACTCTATTCCCAGCACACCAAGACACCCTGGACAGGAGAGACTTGAGAGGACCTTGTAAATTCCTCCTGAGGTGGGGTGTTGTTGCTGGGGTTTGTTCCTCCACCTCAGAGAGACTAGCAGGGGTTACCTGCCTTCTTGGCTTCCTGCCTGGCTTCCTGCCTGCTGTGTCAGGACAGTGTAGTGTAGCTGGTGGGCTGGGTGCTCCTCTGTCAGGGTGGGTGCGGGCCCCTGGGTCTGGGTCGACGTCGTGGCGTCTTCTCCTGAGAGTGGGATCCTCAGTGTGTCCAGAATGAACCGTCCGGCTCCCCCCGTCGAGGTCTCCTACAAGAACATGAGGTTCCTCATCACACACAACCCCACCAACGCCACCCTCGACACCTTCATCGAGGACCTGAAGCAGTATGGTGCAACAACAGTGGTGCGGGTGTGTGAGGTCACCTACGACAAGACACGTCTGGAGAAGGATGGCATCACAGTCATGGACTGGGCCTTTGATGACGGTGCCCCTCCGCCCACTAAGATCGTAGATGATTGGCTGAACCTGCTGAAGACTAAGTTCCGTGAGGACCCTGGCTGCTGCGTGGCGGTGCACTGTGTTGCCGGGCTGGGACGGGCTCCTGTGCTGGTGGCTCTGGCTCTGATCGAGGGCGGGATGAAGTATGAGGAGGcagttcagttcatcaggcagaAGCGCAGGGGAGCGAtcaacagcaagcagctgaccTACCTGGAGAAATATCGCTCCAGACAGCGACTACGCTTCAAAGACCCTCACAAACACAAGAACAAGTGCTGTGTGATGTGATGATGTAGTGTGACCCCGCAGCCCGCCTGTTCTGACCCATATAGAACGACTACATGAACTTTAATGTTGGACCGACCTCCACCCTGCTAAGATGCATTTAGGACTTGACCTGTTGTCTGTCTCCATGGGGACAGTTGCCACTGTTCTGTTGGGATTCTTCTGCTTCTCACTCTCAGGGCTGTTAGAGACCATCTCCTCTCTGATGTCTTTGAAAGAACACGTTCGTCCCCAACTGCCGGCCAATTGAACTCATAGAGAGGAAAAACAAACAAGCCCTATTTCCatcaagtacacacacacacacacacacacacacactgacaaactaTTTTGCACTGATTGTGACATActgtgacatacacacacatcgcCATTGACCACCAGACCAACCCCTCAACCAGCAGCAACACTGTCAGCTTGGTCCCAGGCCTGATCGTTCCTCTTTCCTCCCTGCTGCTAGGTAGCACTGACCCAACCCAATGAAACACACCGACCCACCACTAGCTGTCACAACAGGTCTGCATCACCATACACCATGTTAACTGAAAGCCCCTGCTAGCCATGATGACATGAATGAAATAATCATGAACAATAACAGATTTtatcctgtctgtgtgtttttatCTCAATGTTTCAAGGAAATCCAGTTTAAGGTCTTTGTTCAATTGAAATGCCATCCACAGAGCTCAGCCATCTTGCTCCTTGCTCCGTTTTCATAATGCATGTCAGTTAACACTTGTTAGAATCATGTCCTTGTCTCCTTCTTTTTTTGAGGCTATGGGGATGCGGGATGGGACTTAAAATAGGACGAGGTTTTGTGCCGAGTCGCCGTTTTTTTAAATagcaatattttttacattgtgatATGAAACACTCTGGGATTAGGATTCTTCACCACTGGCTGCTTCTGTTGTACAACATGAAGGATCTCAGTGTATCATGTAGGAGTCAGCTGAGCCTGGGTGGGCTTGGTAGGCAACACCGCCtgtgtcccagatggcaccctattccctatatagtgcactacttttgaccagaggtctATGGGCTACAATGCCTTGAAATATACACAAAAACATGGACTCGCACTGATCCTATGGGCTCCGGTCAAAAGTTGAGCACTATATAAggagtagggtgccatctgggacgcGTACTATGCTTTGGGAACGTAAACATGGCGGTGCCCCGTAGTCGTCTCTGGGATGAAAAACAGCCAACTGAACCGTCTGCTCAGAAATAACGTCCTGGCTCTGTATCTGTCAGTGTGGATATAAATGTCTCTCATCTTGCctctgaaatagcaccctattccccttttatagtgcactactatatagCACACTTTTGACTATAgtcctatgggctctggtcaaaagtagtgcactaaatagggaatagggtgcaagaCGCAGTCTCAGTTAAGGACAGGTACTGAAGGAATGACTGGTATCCTTGGAAGAAAGCTGTCACATTTATCTGCTGCCTTGGAAGTAACCCACTTCAGATTGTTCACAGTTAATGAAGTACAAGAAATAAAGTAATTGTTTAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123461 lncRNA upstream 13802 5491991 ~ 5492744 (+) True G108598
TU123424 lncRNA upstream 46109 5459506 ~ 5460437 (+) False G108567
TU123423 lncRNA upstream 46109 5459800 ~ 5460437 (+) True G108567
TU123396 lncRNA upstream 86765 5418398 ~ 5419781 (+) True G108543
TU123407 lncRNA upstream 104700 5401556 ~ 5401846 (+) True G108554
TU123445 lncRNA downstream 30586 5573451 ~ 5575009 (+) True G108583
TU123450 lncRNA downstream 57798 5600663 ~ 5602911 (+) True G108588
TU123446 lncRNA downstream 62118 5604983 ~ 5606316 (+) True G108584
TU123488 lncRNA downstream 69551 5612416 ~ 5613037 (+) True G108621
TU123489 lncRNA downstream 70720 5613585 ~ 5614123 (+) True G108622
XM_021598289.2 mRNA upstream 49416 5451499 ~ 5457130 (+) True ccn4b
XM_036961549.1 mRNA upstream 59346 5348252 ~ 5447200 (+) False tg
XM_036935725.1 mRNA upstream 156874 5321554 ~ 5349672 (+) False phf20l1
XM_036935729.1 mRNA upstream 156874 5321554 ~ 5349672 (+) False phf20l1
XM_036935735.1 mRNA upstream 156874 5321554 ~ 5349672 (+) False phf20l1
XM_036935869.1 mRNA downstream 129 5542994 ~ 5572618 (+) False dync1i1
XM_036935874.1 mRNA downstream 129 5542994 ~ 5572618 (+) False dync1i1
XM_036935879.1 mRNA downstream 129 5542994 ~ 5572618 (+) False dync1i1
XM_036935882.1 mRNA downstream 129 5542994 ~ 5572618 (+) False dync1i1
XM_036935886.1 mRNA downstream 129 5542994 ~ 5572618 (+) False dync1i1
TU123151 other upstream 206613 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 369554 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 648272 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 694971 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 760960 4744168 ~ 4745586 (+) True G107922
TU123443 other downstream 38428 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 177100 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 177100 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 237349 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 357646 5900511 ~ 5900950 (+) True G108733

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021152 True 804 mRNA 0.48 3 NC_007127.7 31468711 ~ 31475904 (-)
bowfin (Amia calva) AMCG00021720 True 4985 mRNA 0.43 6 CM030130.1 26784119 ~ 26802985 (+)