RNA id: XM_036935966.1


Basic Information

Item Value
RNA id XM_036935966.1
length 3341
RNA type mRNA
GC content 0.48
exon number 7
gene id mylipb
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5812247 ~ 5839646 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCACGGTTGTATTTTTGGACACGTCCTGATCGGTCCATGGACGGTAAAGTTTGAATGTTTGTTTTTCCTGTAAAGTGTAAGTGCATCGATAGATTAAACTACTATAGGACAACTATTGCAAACATACAGATAAATAAAAATGCTTTGCCATATAACGCGACCGGACTCGATGGTGATGGAGGTGGATGTTGATTCGAAGGCTAATGGAGAGGACTGTTTACACAAGGTCTGTCGGAAACTGGGAATAATAGAGGTGGATTACTTTGGGCTTCAGTTCTGTGGAAGCAAAGGGGAGAGTTTGTGGTTGAATCTCAGGAACAGGATCTCCCAACAGATGGATAACCTGTCTCCCTGCAGACTGAAGCTTAGAGTCAAGTTCTTTGTGGAACCCCATCTGACCCTGCAAGAACAGACACGACATATGTTCTTCCTGCACATAAAGGAGGAGCTGGACAGTGGCAGCCTGCAGATGGAGGCTGAGCAGGCCAAGGAGCTGTGTGCCCTCCTAGCCCAGGCTGAGTACGGAGACTACAACCAGAACACAGCCAAGTACTGCTCCAGCCAGATCTTCAGACAGGAGCCTGACCTGGCAACCATCAACAGCATCCAGGAGAAGCACCGTGAGCTAGAGGGTCTGAGCCAGGCGTCAGCAGAGTACCAGGCCCTACAGCTGGTGTCCTCCCTGGAGAACTACGGGGTGGAGTGGCACTGGGCCAGGGACTCAGAGGGACAGAGGCTGGCCATAGGGGTCGGCCCTGAAGGGGTATCTATCTGTCAGGAGGACTTCACCCCCACCAACAGGATCATTTATCCCATCATCCAGATGGCCACCCAGTCAGGGAAGAATGTGTACATGACCATCACTAAGGACAGTGGTGAGGATGTGGCCCTGCTGTTTAAAATGACAAGCACCAGAGCTGCCAGCGGCCTGTACCGGGCCATCACAGAGACCCACGCCTTCTACAGGTGTGACACGGTGACGAACGACGTGATGATGCAGTACAGCCGTGACTTCAAGGGTCACCTGGCGTCTCTCTTCCTCAACGAGAACATCGACCTGGGCAAGAAGTATGTCTTCGACATCCGACGCACCTCCAAGGAAGTCTACGACCACTGCCGCAGGGCGCTCTACAACGCCGGCATGGCAGGGGACTGTGTGTCCGGCGAGCAGAGCCCGTCGCGGTCCCCTGGGGTGGGGGAAGGAGGCTGTGAGGGGTGCCAGAGGAGCCGGGTTCTGGAGGAGAAGCTGCAGCAGCTCCAGGATGCTCTGCTGTGTATGCTGTGCTGTGAAGAGGAGATGGACGCTGCCTTCTGCCCCTGTGGACACATGGTGTGCTGCCACAACTGTGCCGTCCAGCTAGAGGTGTGTCCGGTGTGTCGGTCAGAGGTAGACCATGTCCAACACATCTACCTGCCCACCTGTGCCAACCTGCTGTCCCTGGCAGTGAGCAGTGCTGCCCCCTTCAATATTCCCAGAGACCTGGCCACTCACCTCTGTTCCTCCAGAGAGTTCTACACCAGCACAGACCAGATCTGTCACACGTAGATTTACTTCCAAATAGCTATCATTGCTATcattgctaacgttagctagctaaaaatcTGGAGGTctcccctcaatcttagctagttggctaacgttagctagctaaaaatcTGGAGGTctcccctcaatcttagctagctggctaacgttagctagctaaaatccggaggtctcccctcaatcttagctagctggctaacgttatactgcatctaaagttAATCCGgcgacatcaaaatgatgaaaaatggttttcctactaattatttgccgCCTTTAGAAATGTCATTGTGTTTTCAAGCCACAGTAATAAACTTTAGACTGAATATTCATCAGTCCCCAATGAggatgcattgagtagaatgttCAGTTGGGCATCAGTCCTAAAACAAACcttcaaaacaatattgtgaaGCAACGTGCAAACCATAAATACCAGGGGTAGTGCTGTAGTAATATACCAGTAGTAGTGCTGTAGTAGTATACCAGGGGTAGTGCTGTAGTAGTATACCAGTAGTAGTGCTGTAGTAGTATACCAGTAGTAGTGCTGTAGTAGTTGTATACCAGGGGTAGTGCTGTAGTAGTTGTATACCAGGGGTAGTGCTGTAGTAGTTGTATACCAGTAGTAGTGCTGTAGTAGTTGTATACCAGGGGTAGTGCTGTAGTAGTTGTATACCAGGGGTAGTGCTGTAGTAGTTGTATACCAGGGGTAGTGCTGTAGTAGTTGTATACCAGGGGTAGTGCTGTAGTAGTATACCAGTAGTAGTGCTGTAGTAGTATACCAGTAGTAGTGCTGTAGTAGTTGTATACCAGTAGTAGTGCTGTAGTAGTATACCAGTAGtagtgctgtagtagtagtataccAGTAGTAGTGCTGTAGTAGTTGTATACCAGTAGTAGTGCTGTAGTAGTATACCaggggtagtactgtagtaggaaTATACCAAGGGGTAGTATACCAGTAGTGTAGTAGTACTGCAGTAttggtgttgtagtagtagtgtgcTACTGTATGAGGTGCTATATGACTGCAAACAGTATCATTCTGAACATTaatttctctggcaacagctctggtggacattcctgcagtcagcatgccaactgcacgctccctcaacttgagacatctatggtattgtgttgtgtgacaactgcacattttagaacaatcttttattgtcccccccagctcaaggtgcacctgtgtaaggattgtgctgtttaatcaacttcttgatatgccagcTTCTTGATTATCTTGGCACAGGGGAAATGCTCACTTACCAGGGATGTAAACAGATTtgtgcacaatttgagagaaataagctttttgttcagtatatgtatacTTTACACTCCATTGTATTTTGATATCTTTATCTCTGCCATATATAAACGGTATATACATGTGATGTCTCTGACCATAGTGTTGAAAAAGTCATTACATTAGACTAGAAGAGTGTACCAGACCAGGTAAAtagtctttattttattattatttatcagggcccatagggctgtaatgaagtagtgcactatatagggtgtccGTTGGGATGGATGTTCCCACTGTCTTCCACAGATGAGTTACTCAATTTATCTTCTGGCCTGCAGCGAGTTCAAAAAATGTACCATACCAGGCCTGTTACCAGTCTACAGAAGTCACATTATTGCTTCTCATACCCCCcggcatcccactgctggcttgctcaGATCTAAGCATGGTTGTCCCtggatgctgctggaagtggtgttggagggccagtaggtggCACCCTTTTCTCTgctct

Function

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0007369 gastrulation biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005515 protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10637 MYLIP, MIR; E3 ubiquitin-protein ligase MYLIP

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123624 lncRNA upstream 5307 5806421 ~ 5806940 (+) True G108709
TU123621 lncRNA upstream 7205 5804086 ~ 5805042 (+) False G108707
TU123622 lncRNA upstream 7696 5804086 ~ 5804551 (+) True G108707
TU123615 lncRNA upstream 29326 5780214 ~ 5782921 (+) False G108702
TU123607 lncRNA upstream 33016 5775907 ~ 5779231 (+) True G108698
TU123515 lncRNA downstream 14364 5854010 ~ 5854355 (+) True LOC110505528
TU123522 lncRNA downstream 15609 5855255 ~ 5855783 (+) True G108646
TU123642 lncRNA downstream 40291 5879937 ~ 5880466 (+) True G108722
TU123506 lncRNA downstream 41497 5881143 ~ 5882036 (+) True G108630
TU123523 lncRNA downstream 43448 5883094 ~ 5885133 (+) True G108647
XM_036935962.1 mRNA upstream 58400 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA upstream 58400 5616004 ~ 5753847 (+) True jarid2a
XR_005034689.1 mRNA upstream 64151 5615996 ~ 5748096 (+) False jarid2a
XM_036935845.1 mRNA upstream 219994 5575379 ~ 5592253 (+) False LOC110506279
XM_036935846.1 mRNA upstream 219994 5575381 ~ 5592253 (+) False LOC110506279
XM_036936009.1 mRNA downstream 1871 5841517 ~ 5854174 (+) False LOC110505528
XM_036936052.1 mRNA downstream 114335 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 136554 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 138620 5978266 ~ 5979890 (+) True LOC118937375
XR_005034713.1 mRNA downstream 159284 5998930 ~ 6002265 (+) False LOC110505679
TU123616 other upstream 29603 5780214 ~ 5782644 (+) True G108702
TU123575 other upstream 86668 5719965 ~ 5725579 (+) False G108682
TU123579 other upstream 86865 5719965 ~ 5725382 (+) True G108682
TU123443 other upstream 229797 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 269382 5506546 ~ 5542865 (+) True ptp4a3b
TU123653 other downstream 60865 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 114240 5953886 ~ 5958769 (+) False LOC110505637
TU123500 other downstream 114240 5953886 ~ 5958813 (+) False LOC110505637
TU123491 other downstream 114299 5953945 ~ 5958769 (+) False LOC110505637
TU123495 other downstream 114299 5953945 ~ 5958813 (+) False LOC110505637

Expression Profile