RNA id: XM_036936009.1


Basic Information

Item Value
RNA id XM_036936009.1
length 3287
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110505528
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5841517 ~ 5854355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGAGCCTGTTAGCATCTGGAGGTTCAGGGTTGGCTACTGTCTGGGTCTCAGCAGACCACATCACAGGCTCCATGTTTATCTAGTGATTCATAGAATTATTGATTTATTGGACTGGGACAGGGATTGGACCATCCCGGAGGTGACAGGCCATCATGCCTCGGATAGACGTGGATGTGAAGCTGGACTTTAAAGATGTCCTGTTCAGACCCAAGAGAAGCAGCCTGAAGAGCAGGTCAGAGGTGGACCTACGGAGGACGTTCACGTTCCGTAATTCCAAACAGAGTTACCATGGCATCCCCATCATCGCTGCCAACATGGACACCACGGGCACCTTTGAGATGGCACAGGTCCTCAGCAAGCAAACTCTCTTCACCGCCGTGCAGAAGCACTACACTGTGGAGGAGTGGAAGGATTTTGCAGCCAAGTTTCCAGAATGTTTGGAGCACGTAGCGGTCAGTTCAGGCAGCGGTCAAGCCGACCTGGAGAAGCTGTGCAGCGTCCTGGAGGCCGTCTCTGACATCAGATTCGTCTGTCTGGACGTGGCCAACGGCTACTCTGAACACTTTGTGGAGTTTGTCAAAACCGTCAGGGGGAGGTTTCCTCAACACACTATCATGGCTGGCAACGTGGTGACaggagagatggtggaggagcTGATCCTGGCAGGAGCTGACATCATTAAAGTGGGTATTGGGCCAGGTTCTGTGTGTACGACGCGCATTAAGACGGGAGTGGGATACCCCCAGCTCAGTGCTGTCATAGAGTGTGCAGACTCCGCCCACGGCCTGAAGGCTCACATCATCTCAGATGGCGGATGCAGCTGTCCTGGGGATGTGGCTAAGGCATTTGGCGCTGGAGCTGATTTTGTGATGCTGGGGGGCATGCTGGCTGGCCACGACCAGTGTGCCGGGGAGGTCATTGAGAAGAATGGCAGAAAGGTCCAGCTGTTCTATGGGATGAGCTCTGACACGGCCATGAAGAAACATGTAGGGGGAGTGGCAGAGTACAGAGCATCAGAGGGCAGGACGGTGGAGGTACCGTACAGGGGGGATGTAGAGGCCACCATCAGGGACATTCTGGGTGGTCTGCGCTCCACCTGCACCTACGTAGGAGCTGCCAAACTGAAGGAGCTCAGTCGCAGGACCACCTTTATCAGAGTCACACAGCAGGCCAGCCACATGTTCACATAGTAGTAaatggatggacggatggacaACATAATCTTTCTTGTTTCAATTGTGCTGATTTAACTTCAAATGTAAAAGTGTGAATCTACAACAATATTTACGTGAATGCATGcgttttttttgttgcctgtACACAGTAAACAGAAAGAGGAGAAACAGAATGAAAtaccaacctggactcaggggtagacgtaacatagtaaacttaTATCCGTGACACTCCAAATAGTATGATGTGTAACGTTTGGCATgctattcatttgtggatgtccatcttCCATTTCGTACAATATGTTGCGAATTagcaaaacgtatgatatgttatgaattctaaTTTGTTGAGGCTAAAGTtatctaggtggctaacgttaatGTTAgccaggttaggggttaaggttaggagttaggttaaggttaggggaagggttagctaacatgctaagtagttacaaagtTACAAAAAATTGGTAAGTAGTTCCAAAGTTGCTAATTAGATCAAATTCTAAAATTGTCTGTGATGTTATTCATACACACAGCCTTTGGGTTGCTTGATGTTCATGTTTTACACCTACCCAACCTGACCAACCACTCTACTTTTGTTTTTtgtcttaagtaaccttctgtcttatgtaaccataccaaatgtaacatattatAATAAATTGAGTGTTTCGAAAtctggatttacatttactatgttacgtgtAGTATATGACACCAGGCTGGAAAAACAGTACTAGAGTATGTTACGTGTAGTCTATGAGGCCAGGCTGGAAAAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaTACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTATGTTACgtgtagtctatgagaccaggctggaaaAACAGAGTGCTAGAGTAAGCAGCTGCTCTGTTGCTCCTCTTGAAAGACGAATGACAGAATTTCAGTTGACTCTGTTATTTATTATTCTGAGTATACAGAGACAGTACATTTGTTCacgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123629 lncRNA upstream 6998 5833656 ~ 5834519 (+) True G108712
TU123624 lncRNA upstream 34577 5806421 ~ 5806940 (+) True G108709
TU123621 lncRNA upstream 36475 5804086 ~ 5805042 (+) False G108707
TU123622 lncRNA upstream 36966 5804086 ~ 5804551 (+) True G108707
TU123615 lncRNA upstream 58596 5780214 ~ 5782921 (+) False G108702
TU123522 lncRNA downstream 1081 5855255 ~ 5855783 (+) True G108646
TU123642 lncRNA downstream 25763 5879937 ~ 5880466 (+) True G108722
TU123506 lncRNA downstream 26969 5881143 ~ 5882036 (+) True G108630
TU123523 lncRNA downstream 28920 5883094 ~ 5885133 (+) True G108647
TU123643 lncRNA downstream 32086 5886260 ~ 5886472 (+) True G108723
XM_036935966.1 mRNA upstream 1871 5812247 ~ 5839646 (+) True mylipb
XM_036935962.1 mRNA upstream 87670 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA upstream 87670 5616004 ~ 5753847 (+) True jarid2a
XR_005034689.1 mRNA upstream 93421 5615996 ~ 5748096 (+) False jarid2a
XM_036935845.1 mRNA upstream 249264 5575379 ~ 5592253 (+) False LOC110506279
XM_036936052.1 mRNA downstream 99807 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 122026 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 124092 5978266 ~ 5979890 (+) True LOC118937375
XR_005034713.1 mRNA downstream 144756 5998930 ~ 6002265 (+) False LOC110505679
XR_005034711.1 mRNA downstream 147048 6001222 ~ 6002265 (+) False LOC110505679
TU123616 other upstream 58873 5780214 ~ 5782644 (+) True G108702
TU123575 other upstream 115938 5719965 ~ 5725579 (+) False G108682
TU123579 other upstream 116135 5719965 ~ 5725382 (+) True G108682
TU123443 other upstream 259067 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 298652 5506546 ~ 5542865 (+) True ptp4a3b
TU123653 other downstream 46337 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 99712 5953886 ~ 5958769 (+) False LOC110505637
TU123500 other downstream 99712 5953886 ~ 5958813 (+) False LOC110505637
TU123491 other downstream 99771 5953945 ~ 5958769 (+) False LOC110505637
TU123495 other downstream 99771 5953945 ~ 5958813 (+) False LOC110505637

Expression Profile