RNA id: XR_005034712.1


Basic Information

Item Value
RNA id XR_005034712.1
length 1348
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110505679
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5976200 ~ 6002265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCAATCATACAAGGACATTTAGGGAAGACCGGTCTTTTATTTGACGACCTCCTAAACTTCTGGGCCCGTGTTCATGAAGCATATTTGGTTTTGGTTCGACATGTTCAACATTGTCTTCGTGTTACTGTTTGTCAATAGGATATAATCGCCTGGTTGTGAGTCATTTTCCTTAATCCTTGTAGGGTGTAATGTAATGCGCAATGATACGTGCTTCTGTGCAGGAAGTCAATTTCTCTGGATGACACACCTCTCTGCCGTTTCCTGGTTTTACGGATGAACTCAAATATACTGATTAAAGGGATTGGTTAGCCTACTGTCAAAAGTCAATGTAAAATGTACAGTACAAAAGTCAATGTAAAATGTACAGTACAAAAGTCAATGTAAAATTTACAGTACAAAAGTCAATGTAAAATTTACAGTACAAAAGTCAATGTACAATGTACAGTACAATAGTACAAGCTTTATCCGGGTGTTATTTGTCATGTTGACGTTGAATTCATTTTAATTTTCAGACGACAACACGAATCAAATCACTTTGATGATATAGTTATAGACAATGACGTGATCCAACCATTACTTATTAGATGTTACTGTACCTCTCGCACAATGTCTCATTCTTTTCATCACTGAAACCTGGTCCTGGTGCCATATTCCTGAAAAAAAAAGGTGTTTTGGATGCCACCAAGGCCGCATTTCGTGCTGTTTGCCCAGAGGAAGATGGAGGGTCATGGATGAAGAAGTGGGTCTCCTTCGGGCAGATGGTGCCACCGTGGGGGAGTGATTGACCACCTGCAGAGAGGAAGGGGGGCATATAATCCCAATCCACTATCGGGGTGCAACATGGCTGCAATCCAGGATGAGTGGCAGGGGCTGAAAATCCTGGTCAGCCACAATTTCAAGGACAAGTCTTAGTGGCATGTGGGAGACAATGTTGACAAAGGACCCCTACAGGCACGATTACAAGAACATACTGGAGTTGGTGCAGCTTATGCTGGTGCTGCCCATTTCAGCCGCCCAGTGTGAGTGAGGCTTCTCTGCACAGAACCGGATTAAGATTGACAAGAAGCTGCCTTGGGGTCTCTACCACCGAAGACCTGATGAGGATCAGCCTGGGGGTCTTCTGTCGAGGAGTTGGATCCCACTCCTGCCGTGGACCGCTGGCTGACCTCTAAGCGTGCCAGACGGCCAACATACAAAAGCAGCTGGACAACTGATATCCTTTGCGTCTAGTAGCCATGAGTCAATGTGTGATTGGTGGTATGTGTCCCATGTGTCCCTTAGTACACGCACACAGTATAAATATGTATGTAATAAATTGTTTGTTAATAAACTCTGTGTTACTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123503 lncRNA upstream 14075 5955703 ~ 5962125 (+) True G108627
TU123524 lncRNA upstream 27859 5947511 ~ 5948341 (+) True G108648
TU123683 lncRNA upstream 31209 5943752 ~ 5944991 (+) True G108753
TU123672 lncRNA upstream 34944 5941005 ~ 5941256 (+) True G108752
TU123656 lncRNA upstream 64264 5911688 ~ 5911936 (+) True G108736
TU123729 lncRNA downstream 80871 6083136 ~ 6085913 (+) True G108789
TU123710 lncRNA downstream 84911 6087176 ~ 6087617 (+) True G108773
TU123731 lncRNA downstream 89956 6092221 ~ 6092461 (+) True LOC118937376
TU123717 lncRNA downstream 115572 6117837 ~ 6119044 (+) True G108779
TU123740 lncRNA downstream 131111 6133376 ~ 6134440 (+) True G108799
XM_036936052.1 mRNA upstream 20755 5953981 ~ 5955445 (+) False LOC110505637
XM_036936009.1 mRNA upstream 122026 5841517 ~ 5854174 (+) False LOC110505528
XM_036935966.1 mRNA upstream 136554 5812247 ~ 5839646 (+) True mylipb
XM_036935962.1 mRNA upstream 222353 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA upstream 222353 5616004 ~ 5753847 (+) True jarid2a
XM_036936117.1 mRNA downstream 727 6002992 ~ 6049501 (+) False setd2
XM_036936127.1 mRNA downstream 727 6002992 ~ 6049501 (+) True setd2
XM_036936174.1 mRNA downstream 89814 6092079 ~ 6093940 (+) False LOC118937376
XM_036936180.1 mRNA downstream 89880 6092145 ~ 6093940 (+) False LOC118937376
XM_036936182.1 mRNA downstream 89880 6092145 ~ 6093940 (+) False LOC118937376
TU123500 other upstream 17387 5953886 ~ 5958813 (+) False LOC110505637
TU123495 other upstream 17387 5953945 ~ 5958813 (+) False LOC110505637
TU123496 other upstream 17431 5953886 ~ 5958769 (+) False LOC110505637
TU123491 other upstream 17431 5953945 ~ 5958769 (+) False LOC110505637
TU123497 other upstream 17431 5953945 ~ 5958769 (+) True LOC110505637
TU123712 other downstream 54731 6056996 ~ 6058335 (+) True G108775
TU123748 other downstream 194667 6196932 ~ 6199341 (+) True G108805
TU123869 other downstream 279806 6282071 ~ 6285940 (+) False G108874
TU123867 other downstream 281439 6283704 ~ 6285940 (+) True G108874
TU124055 other downstream 630813 6633078 ~ 6633913 (+) False G109020

Expression Profile