RNA id: XM_036936186.1


Basic Information

Item Value
RNA id XM_036936186.1
length 1486
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC118937376
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6092079 ~ 6093940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacagacaggacacccaTCACTATCAGACATGTCACCAGGTCTACAGGACACCCATCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacacccaTCACTATCAGACATGTCACCACgtctacaggacagacaggacagacaggacactcaTCACTATCAGACATGTCACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGGTCTACAGGACACTCATCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTATCAGACATGTTACCAGgtctacaggacagacaggacactcaTCACTATCAGACATGTCACCACgtctacaggacagacaggacactcaTCACTTTCAGACATGTTACCAGGTCTACAGGGCAGACAGGACACTCATCACTATCAGACATGTTAccaggtctgtctgtcctgtctacaGGACAGACAGTAACTCTCATCTCTTTCTGGACAACAGAAATTACAATATAACTATTTGGgggctgatctagaatcagatcCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTTCTGATCTAGAATCAGATCCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCTCCCCTGTCCAAGTAAACTTACTGATCTAGAATCAGACCCCCCCCCCTGTTCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTTACGGATCTAGAATCAGACCCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAACCTtactgatctagaatcagatcCCCCCTGTCCAAGTAAACTTACTGATTTTGATCTAAAAGCCAAAACTGATCCTAAAACTCTTACTATGACAAAATTGAAACATGGTCTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123710 lncRNA upstream 4565 6087176 ~ 6087617 (+) True G108773
TU123729 lncRNA upstream 6269 6083136 ~ 6085913 (+) True G108789
TU123695 lncRNA upstream 96056 5995802 ~ 5996126 (+) True G108760
TU123693 lncRNA upstream 98383 5993533 ~ 5993799 (+) True G108758
TU123691 lncRNA upstream 108411 5983276 ~ 5983771 (+) True G108756
TU123717 lncRNA downstream 23897 6117837 ~ 6119044 (+) True G108779
TU123740 lncRNA downstream 39436 6133376 ~ 6134440 (+) True G108799
TU123743 lncRNA downstream 42835 6136775 ~ 6137832 (+) True G108802
TU123751 lncRNA downstream 57772 6151712 ~ 6160153 (+) False G108805
TU123776 lncRNA downstream 83314 6177254 ~ 6178243 (+) True G108818
XM_036936117.1 mRNA upstream 42681 6002992 ~ 6049501 (+) False setd2
XM_036936127.1 mRNA upstream 42681 6002992 ~ 6049501 (+) True setd2
XR_005034713.1 mRNA upstream 89917 5998930 ~ 6002265 (+) False LOC110505679
XR_005034711.1 mRNA upstream 89917 6001222 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA upstream 112292 5978266 ~ 5979890 (+) True LOC118937375
NM_001165046.1 mRNA downstream 137429 6231369 ~ 6250042 (+) True ccdc12
XM_036936209.1 mRNA downstream 192618 6286558 ~ 6312599 (+) False cep72
XM_036936220.1 mRNA downstream 192618 6286558 ~ 6312599 (+) False cep72
XM_036936215.1 mRNA downstream 192671 6286611 ~ 6312599 (+) True cep72
XM_036936282.1 mRNA downstream 284433 6378373 ~ 6389788 (+) False trip13
TU123712 other upstream 33847 6056996 ~ 6058335 (+) True G108775
TU123521 other upstream 89988 5999185 ~ 6002194 (+) True LOC110505679
TU123495 other upstream 133369 5953945 ~ 5958813 (+) False LOC110505637
TU123491 other upstream 133413 5953945 ~ 5958769 (+) False LOC110505637
TU123748 other downstream 102992 6196932 ~ 6199341 (+) True G108805
TU123869 other downstream 188131 6282071 ~ 6285940 (+) False G108874
TU123867 other downstream 189764 6283704 ~ 6285940 (+) True G108874
TU124055 other downstream 539138 6633078 ~ 6633913 (+) False G109020
TU124056 other downstream 539138 6633078 ~ 6633913 (+) False G109020

Expression Profile