RNA id: XM_036944084.1


Basic Information

Item Value
RNA id XM_036944084.1
length 4105
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110485563
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27409765 ~ 27419165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAGTATACGACACACTGAGAAAGCCATCGCCATCTGCGCCGATTCAACATAGCCTACATTTACGATTGTATTACTTCTTAAAATAACTTTTTGGGGCTCTCATAAGCTTACAACTATGTTTTGATTCTTGCTTGAACAGTCGCTAAGATTATTTGGTTGTGATAGTTGCAAAATAGCTATTTTGGATGCAgcagttgttagctagaatgctaacgctcATTGATATTGGCTATAGCAAAagccattttactggttgaaggtgaaatgtttttaaaaaaagtataatgcagttgatttgcGATGATGACACAAGCATTactattaagcaggacattcatacaAGGTTTAAAatccaattataatccaaaagtagtatgaaatgcactcataagcaacATGTAAATATAGGCTTTTCCCCCCATGTTCTATAAGAACTTCCCCTTGATCTGTCACTAAATTTCGCGTATCGCCATCGCGAGgcaatgtttgcaaacacagaaACCTGTCCATGGACACCTTTCCAGTGACATCATATCATACTATCCTCTCTCAGCCAGCGCTCCAACCAGCAGCCGAGGATTGGCCAATGGCCAGATAGCGTGAGCTCTGCTCACCGATGTGCTGTTCCTGATTGGACGGTTCAGGTACAGAGAGGGCGGGACACCAAACCTGCGAACCCGAAGTTCCTACCTATCTCATTATCATATAATATTTAGCATCATCTGAAACCATCTGAAATGTCTGGTGGAATAATTGTAATGGTTTTGAATACTTTTCTTTTTGATTAACGGATATATTTGAAATATTACTAGGCCTACGATCTGCTAAAGCAACTGAAATAGGATGCTCAATTGTCTACGCCAGTAGATAGAATATTTGCTATTTTTGAAATAACTGTTGAACTGTGATATTTTATTGCGTACTTTATTCTATTCCATGATCTCGGCTACTTTTTGTTTTTGCAATTTAGTTTCAGGTTATAGGTTAGGAAACATTCTGAGCAGTGGTAATTTATTGCATGAGTTAGCCTAATCATTTCAAGTAGCCTAgtttaataatataataaatatgtgGACTTTTCTTGGAATTGCAAGTTTCACCTACATTTATAAGAAATGCGACGCAGTTTTGGAGTATGCTCACAAAGAGATAATCCTGGCGGCTGTAGTGTTCTTGGCAGTGGGGATGCTGCTATCCTATGTCAGGTACCACGGACATACATGCAAGGTACCCCAAATTCTACAATTACCGCTGGAACTTTTATTATCCCTACCGGTCATCAATACATTTATACCGAAACCCTCAGCTGTCAGGCACAGGAGTGGAGAGAGCGCGTCAAAGAAGGGAGGTGGCAGGAGGAAAAGAGTGTGTTCCTCAGCCATGGAGAGCCCCCCAGCAACAGGGGACTCTCCTGCATCTCAGGAGCCGGATGTGATCATAGTAGGGGCGGGAGTCCTGGGGTCGGCCATGGCTGTAGTGCTGGCCCGGGACGGCCGGAGGGTCACTGTGATAGAGAGGGACCTGAAGGAGCCTGACAGGATAGTGGGAGAGCTGCTGCAGCCTGGTGGATACAGGGCCCTGCGAGCACTGGGAATGGAGGGTTCAGTGGAGGGGCTGGATGCCCACGTGGTGAACGGCTATGTGATTCATGACATCGAGAGCAGCACAGAGGTGGAGATCCCATATCCCCAGGCAGACAGCAGTATCCAGTGTGGCAGGGCCTTTCACCACGGACGCTTTATCATGGGTCTGCGCAGAGCCGCCCTCGCTGAGCCAAATGTTACGCTCATTGAAGGCACCGTGTCCAGCCTGGAGGAAGAGGATGGCTGTGTGACAGGAGTGCAGTACAGGGAAAAGGAGACAGGAGACACAAAGGAGGTCCATGCAGCAgtaactgtagtagctgacggCTGTTTCTCAAAGTTCAGGAAGAGCCTGGTAGCCGGGAAGGCCCAGACCTCCTCTCACTTTGTTGGATGTATCATGAAGAACTCTCCCCAGTTCAAGCCCCACCATGCTGAGCTGGTCCTGGCTAACCCCAGCCCTGTCCTCATCTACCAGATCTCCTCCTCAGACACCAGGGTGCTGGTGGACATCAGGGGAGAGATGCCCAGGAACCTCACCGAGTACATGGCTGAGAAAATACACCCACAACTACCAGAACACCTAAAGGAGCCGTTCATGGTGGCTCTGCAGAACGACCGGCTGAGGTCTATGCCAGCAAGCTTCCTGCCTCCGTCCCCAGTCAACAAGCCAGGTGTGCTCCTGCTGGGTGACGCCTACAACATGAGACACCCTCTGACCGGAGGAGGGATGAGTGTGGCCCTCAACGACGTCCTGATCTGGAGGAGCCTGATGAAGAACATCCCTGACCTGTACGACAACACAGCCATGCTCCAGGCAAAGAAAAAATTCCACTGGGAACGCAAGTCATCACATTCCTTTGTGGTGAATGTGTTGGCTCAAGCCCTGTACGAGTTGTTTGCTGCAACAGACAATTCTCTCCACCAGCTGAGAAAGGCATGCTTCCTTTACTTCAAGCTGGGTGGGGAGTGCGTCAACGGTCCCATTGGTCTTCTCTCAGTGTTGACGCCCCATCCGATGACTCTGATTGGACACTTCTTTGCCGTGGCCTTGTACGCCATCTACTACAACTTCAAGTCTGAGTCGTGGTTCACCAAACCCCGAGCCTTATTCACGAGTGGAGCTATCCTGTACCGCGCCTGTACCGTCATGTTTCCCCTCATCTACTCTGAGTTCAAGTACCTGGTGTACTGAGCAGTGATCTAATCTGAGCCCTAACCCAGTGGAACACACACCAGCCTTAGACaacagggtcgtattcattagtgcacaaacgtagcaaaacattttgcaatggaatACGAAGATGTTCAGGTTTGCCCCTACCCTCTTTCTGCCTGTTTTCTTCCAATTAGTTTCTTGTGAATACATTTACTGAGCATCACGGACCCCTGATGgagaacgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccgaaagtGTAGTTAACTGTCAAGTCAATTTGGCTGTATGTATGATTTATATGAAACCACTTAGTTTTAGGCCAACAATTATGCTTTTTTGTTGGGTGTGGGGAGGCATGCCACTTTCTGTCCAATGATGTAATTTCTGGACAATGTTTCTGTGAATTTACGCAAGGGATCCCTTTTGTCTCAAGCACACCCCTAGAGGCAAAAGTTCTGTATAGCCTCTTTAATATTACACCATCCTATCATCACTGTCAACAGGGATCTTGTACAGGTCTCTAAAGTGACCATTATTCAGTGCTGAAGCCTTTGACCTTGATCATATGTCTTTATCTCTGCCTAAAGGTCTGCCCAATGATAAGACGTCTTCTGAGGACGAGGTCTAAATTGACGGTGACAATTATTTAGTAATGCCTTGTATATTCAGAATTTACATCACAACCATGCATTTACGTAGTGTAACAGACAATGCGTAAGAGGTTTGCATTAGCAACTCTTAATTGCAAATAACCAGCAGGACTGACTACAGGTGTCTGTTTAACCACTTTGCTGCTAATTGAACATGAGGACAAAACATGTCCTTCCTGCTTGTGTTCTATCTTCTCTCCATGCCAATGGCTCAAAAAACAGTTGGCTCTTTGTCTACCCTTATTCCAAACGGTATCCTTATTTTGTTCTGAAAAAGCATGTTCCTTGTGCATTATTTTAACTGTACATGTACAATCAAATGATTATGTATTAAACTGTTTGATTGGTTCAAGTCAGATCACCTGTCCTTAACTTTTGCCAAGTTATAGTTTTCCTGCCTTAAATGGGGTTTTACACATTGTGACAAGGGATCCACCCCAACACATCTCTGGTACTTGTTTAAAAAGTGATTCTTCAGTTGTGAACACCTGCTGGAATAAAAGTGTGACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147404 lncRNA upstream 20947 27388542 ~ 27388818 (+) True G127767
TU147333 lncRNA upstream 97269 27310567 ~ 27312496 (+) True G127699
TU147331 lncRNA upstream 99725 27308528 ~ 27310040 (+) True G127697
TU147346 lncRNA upstream 126077 27283390 ~ 27283688 (+) True G127712
TU147343 lncRNA upstream 129045 27280518 ~ 27280720 (+) True G127709
TU147414 lncRNA downstream 4886 27424051 ~ 27429021 (+) True G127775
TU147468 lncRNA downstream 100822 27519987 ~ 27569509 (+) True G127824
TU147842 lncRNA downstream 246859 27666024 ~ 27666362 (+) True G128160
TU147845 lncRNA downstream 263269 27682434 ~ 27682656 (+) True G128163
TU147847 lncRNA downstream 266423 27685588 ~ 27685805 (+) True G128165
XM_021556627.2 mRNA upstream 776 27403665 ~ 27408989 (+) False LOC110485528
XM_021556635.2 mRNA upstream 776 27403665 ~ 27408989 (+) False LOC110485528
XM_036944079.1 mRNA upstream 776 27405057 ~ 27408989 (+) True LOC110485528
XM_036944072.1 mRNA upstream 6340 27390590 ~ 27403425 (+) False LOC110485543
XM_036944070.1 mRNA upstream 6340 27390874 ~ 27403425 (+) True LOC110485543
XR_005036074.1 mRNA downstream 232446 27651611 ~ 27677736 (+) False LOC110485628
XM_021556734.2 mRNA downstream 232446 27651611 ~ 27678014 (+) False LOC110485628
XM_036944150.1 mRNA downstream 232822 27651987 ~ 27678014 (+) True LOC110485628
LOC110534576 mRNA downstream 488624 27907789 ~ 27909986 (+) True LOC110534576
XM_021556797.2 mRNA downstream 745995 28165160 ~ 28171323 (+) False LOC110485682
TU147350 other upstream 106210 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 219172 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 249120 27148176 ~ 27160645 (+) True LOC110485212
TU146788 other upstream 548523 26857698 ~ 26861242 (+) False G127198
TU146777 other upstream 614003 26794210 ~ 26795762 (+) True G127190
TU147867 other downstream 297317 27716482 ~ 27717163 (+) True G128185
TU148132 other downstream 669482 28088647 ~ 28089445 (+) True G128436
TU148197 other downstream 831677 28250842 ~ 28547915 (+) True G128490
TU148570 other downstream 1512891 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 1520734 28939899 ~ 28981288 (+) True G128853

Expression Profile